Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   HBA48_RS10450 Genome accession   NZ_CP050135
Coordinates   2002779..2003087 (-) Length   102 a.a.
NCBI ID   WP_003788664.1    Uniprot ID   A0AAX2J377
Organism   Kingella kingae strain ATCC 23331     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1997779..2008087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA48_RS10420 (HBA48_10460) - 1997879..1998364 (+) 486 WP_019390407.1 PIN domain-containing protein -
  HBA48_RS10425 (HBA48_10465) uvrC 1998416..2000248 (-) 1833 WP_038329540.1 excinuclease ABC subunit UvrC -
  HBA48_RS10430 (HBA48_10470) - 2000284..2000646 (-) 363 WP_164538383.1 HAD domain-containing protein -
  HBA48_RS10435 (HBA48_10475) - 2000595..2000840 (-) 246 WP_223877626.1 FAD-dependent monooxygenase -
  HBA48_RS10440 (HBA48_10480) tsf 2000893..2001747 (-) 855 WP_003792035.1 translation elongation factor Ts -
  HBA48_RS10445 (HBA48_10485) rpsB 2001832..2002557 (-) 726 WP_003792037.1 30S ribosomal protein S2 -
  HBA48_RS10450 (HBA48_10490) comE 2002779..2003087 (-) 309 WP_003788664.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 10803.69 Da        Isoelectric Point: 10.6245

>NTDB_id=430276 HBA48_RS10450 WP_003788664.1 2002779..2003087(-) (comE) [Kingella kingae strain ATCC 23331]
MLKKIVLSIISLGVTTLSFAQLNINTATADELDKQLNGIGPAKAKAIVEYREKNGAFKSVDDLASVPGIKMATVNKLREQ
ATVGNVAAKPVTTKAQPITKPK

Nucleotide


Download         Length: 309 bp        

>NTDB_id=430276 HBA48_RS10450 WP_003788664.1 2002779..2003087(-) (comE) [Kingella kingae strain ATCC 23331]
ATGTTAAAGAAAATAGTGTTGTCTATTATTTCATTAGGTGTTACCACATTAAGTTTTGCCCAATTAAATATTAATACTGC
AACGGCTGATGAATTGGATAAGCAACTCAATGGTATTGGTCCTGCCAAGGCAAAGGCGATTGTTGAATACCGTGAAAAAA
ATGGTGCATTCAAATCGGTTGATGATTTAGCTTCTGTGCCAGGTATCAAAATGGCTACGGTGAATAAGTTGCGTGAACAA
GCAACTGTGGGAAATGTTGCGGCAAAACCTGTTACAACTAAAGCACAACCCATTACGAAGCCTAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

53.191

92.157

0.49
  comE Neisseria gonorrhoeae MS11

53.191

92.157

0.49
  comE Neisseria gonorrhoeae MS11

53.191

92.157

0.49
  comE Neisseria gonorrhoeae MS11

53.191

92.157

0.49
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.561

80.392

0.382