Detailed information NTG0430259

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HBA48_RS03250
• Genome accession: NZ_CP050135
• Coordinates: 617800..618711 (+)
• Length: 303 a.a.
• NCBI ID: WP_080571747.1
• Uniprot ID: -
• Organism: Kingella kingae strain ATCC 23331
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 612800..623711

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HBA48_RS03225 (HBA48_03245)	cyaY	612808..613131 (-)	324	WP_099046165.1	iron donor protein CyaY	-
HBA48_RS03230 (HBA48_03250)	-	613222..613416 (+)	195	WP_003790918.1	lipoprotein	-
HBA48_RS03235 (HBA48_03255)	lysA	613385..614614 (+)	1230	WP_134793864.1	diaminopimelate decarboxylase	-
HBA48_RS03240 (HBA48_03260)	pilF	614800..616485 (+)	1686	WP_003787777.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HBA48_RS03245 (HBA48_03265)	pilG	616532..617800 (+)	1269	WP_003790915.1	type II secretion system F family protein	Machinery gene
HBA48_RS03250 (HBA48_03270)	pilD	617800..618711 (+)	912	WP_080571747.1	A24 family peptidase	Machinery gene
HBA48_RS03255 (HBA48_03275)	coaE	618713..619321 (+)	609	WP_003787784.1	dephospho-CoA kinase	-
HBA48_RS03260 (HBA48_03280)	zapD	619436..620197 (+)	762	WP_003790912.1	cell division protein ZapD	-
HBA48_RS03265 (HBA48_03285)	pncC	620217..620693 (+)	477	WP_003787789.1	nicotinamide-nucleotide amidase	-
HBA48_RS03270 (HBA48_03290)	-	620703..621323 (+)	621	WP_003790910.1	L-threonylcarbamoyladenylate synthase	-
HBA48_RS03275 (HBA48_03295)	-	621413..622606 (-)	1194	WP_166503195.1	acetate kinase	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 33606.95 Da
• Isoelectric Point: 7.8660

>NTDB_id=430259 HBA48_RS03250 WP_080571747.1 617800..618711(+) (pilD) [Kingella kingae strain ATCC 23331]
MVGEVYFTIIVALLFGLLIGSFLNVVIYRLPVMLNRDWTEAACEQLNINDEFWQKQPASVEQGLREHFGLNRAVSGTFNL
MTPPSRCGNCGSAVRPWQNIPVLSWLMLRGKCAGCHKPISIRYPLVELLTGVLFAVMAFKYGWTWYTVGACLFTAYVVAM
TFIDADTQLLPDDLTIPLMRWGLLFNLLTGFIPLTQSVWGMLIGYMSLWTLSQTYKLIRGVDGMGAGDFKMLAAIGAWLG
AWILPVVIFAAAMVFLVVAIIRGIGKEQPMAYGPCLGVAGWLVFLFYDVVMRGVTAWLTGSGF

Nucleotide

• Length: 912 bp

>NTDB_id=430259 HBA48_RS03250 WP_080571747.1 617800..618711(+) (pilD) [Kingella kingae strain ATCC 23331]
ATTGTGGGTGAGGTTTATTTTACGATTATAGTTGCGCTACTTTTCGGCTTACTTATCGGCAGCTTTTTAAATGTGGTCAT
TTATCGGCTGCCCGTGATGCTCAATCGCGATTGGACAGAAGCAGCCTGCGAGCAACTCAATATCAACGATGAATTTTGGC
AAAAGCAGCCTGCATCCGTAGAACAAGGTCTGCGCGAACACTTTGGCTTAAACCGTGCTGTGTCAGGCACATTCAACTTG
ATGACACCGCCATCGCGTTGTGGCAACTGCGGTTCAGCCGTGCGTCCTTGGCAAAACATTCCTGTGTTGAGCTGGTTGAT
GTTGCGTGGCAAATGTGCAGGCTGCCACAAACCCATTAGCATTCGCTATCCTTTGGTAGAACTACTCACAGGCGTGTTGT
TTGCGGTAATGGCATTCAAGTATGGCTGGACTTGGTACACCGTAGGCGCGTGTTTGTTTACCGCTTATGTCGTTGCCATG
ACCTTTATTGATGCCGACACCCAACTTTTGCCCGATGACTTAACCATTCCATTGATGCGCTGGGGCTTGTTGTTTAACTT
GCTTACAGGCTTCATTCCGCTAACGCAATCGGTTTGGGGCATGTTGATTGGCTACATGAGTCTGTGGACGCTGTCGCAAA
CCTATAAACTAATTCGTGGCGTGGACGGCATGGGCGCAGGCGATTTCAAAATGCTGGCTGCGATTGGTGCGTGGCTGGGT
GCATGGATTTTGCCTGTGGTGATTTTTGCTGCGGCGATGGTGTTTTTGGTGGTTGCCATTATTCGGGGCATTGGCAAAGA
ACAGCCAATGGCATACGGCCCGTGTTTGGGCGTTGCCGGCTGGTTGGTCTTTTTGTTTTACGATGTGGTGATGCGTGGCG
TAACAGCTTGGCTCACTGGGTCGGGTTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-140)

• Type IV leader peptidase family (Peptidase_A24) (153-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	50.853	96.7	0.492
pilD	Vibrio cholerae strain A1552	41.667	95.05	0.396
pilD	Acinetobacter baumannii D1279779	41.404	94.059	0.389
pilD	Vibrio campbellii strain DS40M4	41.429	92.409	0.383
pilD	Acinetobacter nosocomialis M2	40.702	94.059	0.383