Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   HBA50_RS05395 Genome accession   NZ_CP050133
Coordinates   1093109..1095073 (-) Length   654 a.a.
NCBI ID   WP_045497479.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1088109..1100073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS05370 (HBA50_05370) gyrA 1088606..1091056 (-) 2451 WP_045497473.1 DNA gyrase subunit A -
  HBA50_RS05375 (HBA50_05375) - 1091263..1092249 (+) 987 WP_005591942.1 L-lactate dehydrogenase -
  HBA50_RS05380 (HBA50_05380) - 1092339..1092707 (-) 369 WP_045497476.1 NUDIX hydrolase -
  HBA50_RS05395 (HBA50_05395) amiA 1093109..1095073 (-) 1965 WP_045497479.1 peptide ABC transporter substrate-binding protein Regulator
  HBA50_RS05400 (HBA50_05400) - 1095343..1095597 (+) 255 WP_015605027.1 metal-sensitive transcriptional regulator -
  HBA50_RS05405 (HBA50_05405) - 1095648..1095941 (-) 294 WP_045497481.1 rhodanese-like domain-containing protein -
  HBA50_RS05410 (HBA50_05410) - 1095938..1097590 (-) 1653 WP_045497483.1 FAD-dependent oxidoreductase -
  HBA50_RS05415 (HBA50_05415) - 1097604..1097912 (-) 309 WP_045497485.1 rhodanese-like domain-containing protein -
  HBA50_RS05420 (HBA50_05420) - 1098016..1100004 (-) 1989 WP_166492636.1 NACHT domain-containing NTPase -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72776.99 Da        Isoelectric Point: 4.9748

>NTDB_id=430218 HBA50_RS05395 WP_045497479.1 1093109..1095073(-) (amiA) [Streptococcus cristatus ATCC 51100]
MKVSKMLLATGVVLSAGVFLSACGKSSSSTTTYSYVYASDPDSLNYLTTNRATTSDVITNLVDGLLENDEYGNLVPSLAE
SWTVSQDGLTYTYKLRKDAKWFNVDGEEVASVKAQDFVTGLKYVADQKSEALYLIQDSISGLDAYVKGDEKDFSKVGVKA
VDDYTVQYTLTRPEPYWNSKTTNNILFPVNEEFLKSKGKDFGSVDPSSILYNGPFLLKSLTSKSSMEFVKNPNYYDKDKV
SLEHVKLTYYDGSDQESLIRNFSDGAYSGARLYPNTSGFAAVKKKYADNILYSPQDATSYYFNFNFNRQSYNHTSKTSDA
QKTATKEAVLNKDFRQAVNFALDRTSYGAQSNGKDGATKQLRNTLVPPTFVQIGDQTFGQVVASKLVNYGTEWANIDLTD
AQDAYYNPEKAKARFAKAKEALESKGVQFPIHLDLPVDQADKVSIQWASSVKQSIESTLGAENVVIDLQKISVDDLNNIT
YFANTAAQKDYDFYTGGWSADYQDPSTYLDTLNVNNGASLQNFGFEPGQDMDKMKELGLDTYTKMLEEANAETTDVKVRY
EKYADAQAWLLDSGIIMPTISGGGSPSVSKSKPFSRAYSLVGIKGSGFNFKYTKLRSEIVTTKEYEEAKKKWQEKTLESN
KKAQEELADHIEKK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=430218 HBA50_RS05395 WP_045497479.1 1093109..1095073(-) (amiA) [Streptococcus cristatus ATCC 51100]
ATGAAAGTATCAAAAATGCTTTTAGCTACTGGAGTGGTACTCAGTGCAGGAGTATTCTTGTCAGCTTGTGGCAAATCTTC
ATCCAGCACAACCACATATTCTTATGTTTATGCCAGCGATCCAGATAGCTTGAACTACCTGACCACTAACCGTGCAACTA
CATCAGACGTTATTACAAACCTTGTAGATGGTCTTTTGGAAAATGATGAATATGGAAATCTAGTTCCTTCTCTTGCAGAA
TCATGGACAGTTTCTCAAGATGGCCTGACTTACACATATAAGCTTCGTAAGGATGCTAAGTGGTTCAATGTTGATGGCGA
AGAAGTTGCAAGTGTGAAAGCTCAAGACTTTGTGACTGGACTTAAATATGTGGCTGACCAAAAGTCTGAAGCTCTTTACC
TAATTCAGGACTCGATTAGTGGCTTGGATGCCTATGTCAAAGGCGACGAAAAAGACTTTTCAAAAGTCGGAGTGAAGGCA
GTAGATGATTATACTGTTCAATACACGCTGACACGCCCAGAGCCTTATTGGAACTCTAAAACTACGAATAATATCTTGTT
CCCTGTCAATGAAGAATTTTTGAAGTCTAAAGGAAAAGATTTTGGTTCTGTTGATCCATCAAGTATTCTTTACAATGGTC
CTTTCCTTTTGAAATCTTTGACTTCTAAATCGTCTATGGAATTCGTTAAGAATCCCAATTATTACGATAAAGACAAAGTC
AGTCTAGAACATGTCAAATTAACCTACTATGATGGATCAGACCAAGAATCTTTGATTCGCAACTTCAGCGATGGAGCTTA
TAGTGGTGCACGTCTCTATCCGAATACTTCAGGTTTTGCGGCAGTTAAAAAGAAATATGCGGACAATATCCTTTACAGTC
CACAGGATGCGACCTCATATTACTTTAATTTCAACTTCAACCGTCAATCATACAATCACACTTCCAAAACAAGTGATGCT
CAAAAGACTGCAACAAAAGAAGCGGTTTTAAATAAAGACTTCCGTCAGGCCGTCAATTTTGCCCTTGACCGGACTTCTTA
TGGTGCGCAAAGTAATGGTAAAGATGGAGCTACCAAGCAGTTGAGAAATACGCTTGTCCCTCCAACATTTGTTCAAATTG
GCGATCAAACATTTGGCCAAGTTGTTGCCTCTAAATTAGTAAATTATGGCACAGAATGGGCGAATATCGACCTGACAGAT
GCTCAAGATGCTTATTATAATCCAGAAAAAGCCAAAGCAAGATTTGCTAAAGCTAAGGAAGCTTTAGAGTCTAAGGGAGT
TCAATTCCCAATTCATTTGGACCTTCCTGTAGACCAGGCTGACAAGGTGAGTATCCAATGGGCAAGTTCAGTAAAACAAT
CAATTGAATCAACCTTGGGTGCAGAAAATGTAGTGATTGACCTGCAGAAGATTAGTGTGGATGATTTGAACAACATCACC
TATTTTGCCAACACCGCAGCTCAAAAGGACTATGACTTCTACACAGGTGGTTGGTCAGCTGACTATCAAGATCCATCTAC
CTACTTAGATACTCTAAATGTAAATAATGGCGCTAGCTTGCAAAACTTTGGTTTTGAGCCAGGCCAAGATATGGACAAGA
TGAAAGAGCTGGGCTTGGACACTTATACTAAGATGTTGGAAGAGGCAAATGCTGAAACAACAGATGTTAAAGTTCGCTAT
GAAAAATATGCGGATGCACAAGCTTGGTTGCTGGATAGTGGGATTATCATGCCGACCATTTCAGGAGGCGGTAGTCCTTC
TGTAAGTAAGTCCAAACCTTTCAGTCGTGCCTATTCACTCGTTGGAATTAAGGGATCTGGCTTCAACTTTAAATATACAA
AGCTCAGAAGCGAGATTGTAACGACCAAGGAATATGAAGAAGCTAAGAAGAAATGGCAAGAAAAAACGTTAGAATCTAAC
AAAAAAGCCCAAGAAGAGCTAGCAGATCATATCGAAAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.335

100

0.555
  amiA3 Streptococcus thermophilus LMD-9

54.033

100

0.543
  amiA3 Streptococcus thermophilus LMG 18311

53.881

100

0.541