Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   HBA50_RS04005 Genome accession   NZ_CP050133
Coordinates   808350..809579 (+) Length   409 a.a.
NCBI ID   WP_005589758.1    Uniprot ID   A0A0F2CWF6
Organism   Streptococcus cristatus ATCC 51100     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 803350..814579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS03975 (HBA50_03975) endA 803455..804303 (+) 849 WP_045496806.1 DNA/RNA non-specific endonuclease Machinery gene
  HBA50_RS03980 (HBA50_03980) - 804510..805469 (+) 960 WP_045496809.1 ROK family glucokinase -
  HBA50_RS03985 (HBA50_03985) - 805515..805922 (+) 408 WP_045496812.1 hypothetical protein -
  HBA50_RS03990 (HBA50_03990) - 806006..806845 (+) 840 WP_045496815.1 thymidylate synthase -
  HBA50_RS03995 (HBA50_03995) - 806980..807465 (+) 486 WP_045496817.1 hypothetical protein -
  HBA50_RS04000 (HBA50_04000) - 807619..808131 (+) 513 WP_045496819.1 dihydrofolate reductase -
  HBA50_RS04005 (HBA50_04005) clpX 808350..809579 (+) 1230 WP_005589758.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  HBA50_RS04010 (HBA50_04010) yihA 809589..810176 (+) 588 WP_005589759.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  HBA50_RS04015 (HBA50_04015) - 810469..811176 (+) 708 WP_045496823.1 glucosaminidase domain-containing protein -
  HBA50_RS04020 (HBA50_04020) mmuM 811313..812260 (+) 948 WP_045496825.1 homocysteine S-methyltransferase -
  HBA50_RS04025 (HBA50_04025) - 812376..813173 (+) 798 WP_045496828.1 formate/nitrite transporter family protein -
  HBA50_RS04030 (HBA50_04030) - 813302..813643 (+) 342 WP_015604705.1 hypothetical protein -
  HBA50_RS04035 (HBA50_04035) rplJ 813877..814377 (+) 501 WP_001287273.1 50S ribosomal protein L10 -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45456.92 Da        Isoelectric Point: 4.4356

>NTDB_id=430214 HBA50_RS04005 WP_005589758.1 808350..809579(+) (clpX) [Streptococcus cristatus ATCC 51100]
MPTNRNNEMMVYCSFCGKNQDEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDSREEDDVELQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENI
LLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDEGASYMQAIVADDIQKFGIIPELIGRLPVFAALEQLTVDDLVRI
LSEPRNALVKQYQTLLSYDDVELEFDEEALQAIARKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKLVRITKEAVDG
TDKPILETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=430214 HBA50_RS04005 WP_005589758.1 808350..809579(+) (clpX) [Streptococcus cristatus ATCC 51100]
ATGCCTACAAATCGTAATAATGAGATGATGGTATATTGTTCTTTCTGTGGAAAGAATCAGGACGAAGTCCAAAAAATTAT
TGCGGGCAACAATGCCTTTATCTGTAATGAATGTGTCGAGTTGGCGCAGGAAATTATTCGAGAAGAATTAGCTGAGGAAG
TTTTAGCTGATCTTTCTGAAGTACCAAAACCACAAGAATTGCTCAATATTTTGAACCACTATGTGATTGGTCAAGATCGG
GCTAAGCGGGCTTTGGCAGTTGCTGTTTACAATCACTATAAGCGGATTAATTTTCATGACAGTCGCGAAGAGGATGATGT
GGAACTACAAAAATCAAACATCCTCATGATTGGTCCAACTGGATCTGGGAAAACATTCCTGGCTCAGACCTTGGCGCGCA
GTCTCAATGTTCCTTTTGCTATTGCGGATGCCACTGCTTTGACTGAGGCTGGCTATGTTGGTGAAGATGTCGAAAATATC
TTGCTCAAGCTTTTACAAGCAGCAGATTTTAATATTGAACGGGCAGAACGTGGTATCATCTATGTGGATGAAATCGACAA
GATTGCTAAGAAGAGCGAAAATGTTTCTATCACCCGTGATGTTTCAGGTGAGGGTGTTCAGCAAGCCTTGCTGAAGATTA
TCGAAGGAACGGTAGCCAGCGTGCCTCCTCAAGGTGGTCGTAAGCATCCACAGCAAGAAATGATTCAGGTTGATACCAAG
AATATTCTCTTTATTGTTGGTGGTGCTTTTGACGGTATCGAAGAGATTGTCAAGCAACGTCTTGGTGAGAAGATTATCGG
TTTCGGTCAAAATAATAAGGCAATTGACGAGGGTGCGTCATATATGCAGGCCATTGTCGCTGACGATATTCAAAAATTTG
GGATTATTCCTGAGTTGATTGGTCGTTTGCCAGTTTTTGCAGCTCTAGAGCAGCTGACTGTTGATGACTTAGTTCGCATT
TTAAGTGAACCGAGAAATGCACTAGTGAAGCAATACCAAACCTTGCTTTCTTATGATGATGTTGAGCTTGAATTTGACGA
GGAAGCCCTGCAAGCCATTGCGAGAAAAGCCATCGAACGTAAGACAGGTGCGCGTGGACTTCGTTCAATTATTGAAGAAA
CCATGATGGATGTCATGTTTGAAGTGCCAAGTCAGGAAAATGTTAAGCTGGTTCGTATCACGAAGGAAGCAGTGGATGGC
ACAGACAAGCCAATCTTAGAAACTGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2CWF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.553

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.354

98.044

0.572