Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   HBA50_RS03975 Genome accession   NZ_CP050133
Coordinates   803455..804303 (+) Length   282 a.a.
NCBI ID   WP_045496806.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 798455..809303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS03945 (HBA50_03945) - 798783..799661 (+) 879 WP_005589739.1 F0F1 ATP synthase subunit gamma -
  HBA50_RS03950 (HBA50_03950) atpD 799699..801105 (+) 1407 WP_005589740.1 F0F1 ATP synthase subunit beta -
  HBA50_RS03955 (HBA50_03955) - 801116..801535 (+) 420 WP_005592148.1 F0F1 ATP synthase subunit epsilon -
  HBA50_RS03960 (HBA50_03960) - 801623..801853 (+) 231 WP_045496797.1 DUF1146 family protein -
  HBA50_RS03965 (HBA50_03965) murA 801922..803202 (+) 1281 WP_045496800.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  HBA50_RS03970 (HBA50_03970) - 803195..803383 (+) 189 WP_045496803.1 DNA-directed RNA polymerase subunit beta -
  HBA50_RS03975 (HBA50_03975) endA 803455..804303 (+) 849 WP_045496806.1 DNA/RNA non-specific endonuclease Machinery gene
  HBA50_RS03980 (HBA50_03980) - 804510..805469 (+) 960 WP_045496809.1 ROK family glucokinase -
  HBA50_RS03985 (HBA50_03985) - 805515..805922 (+) 408 WP_045496812.1 hypothetical protein -
  HBA50_RS03990 (HBA50_03990) - 806006..806845 (+) 840 WP_045496815.1 thymidylate synthase -
  HBA50_RS03995 (HBA50_03995) - 806980..807465 (+) 486 WP_045496817.1 hypothetical protein -
  HBA50_RS04000 (HBA50_04000) - 807619..808131 (+) 513 WP_045496819.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 30543.03 Da        Isoelectric Point: 10.0964

>NTDB_id=430213 HBA50_RS03975 WP_045496806.1 803455..804303(+) (endA) [Streptococcus cristatus ATCC 51100]
MPKRKKLQKKSTKSTQTIAGLLVALTLSLGAYFFGNGTQSPAVNTSSAISQNRDTSTPDQALAESVLTDSVRSQLGGKIE
WNGAGAFIINENQTNLDAKVSSVPYADNKTKMVQGQTVPTVANALLAKSTRQYKSREETGNASTSWVPAGWHQVKHLSGD
YNHAVDRGHLLAYSLIGGLKGFDASTSNPANIAVQTAWANQANKDNSTGQNYYETQIRRALDQNKRVRYRVTLIYASEND
LVSSGSHLEAKSSDGSLEFNVFVPNVQSGIVLDYRTGKVSIR

Nucleotide


Download         Length: 849 bp        

>NTDB_id=430213 HBA50_RS03975 WP_045496806.1 803455..804303(+) (endA) [Streptococcus cristatus ATCC 51100]
ATGCCAAAAAGAAAGAAATTACAAAAAAAGAGCACTAAATCTACTCAGACTATAGCTGGGCTTCTTGTTGCTCTGACTTT
ATCACTGGGAGCCTACTTTTTTGGAAATGGCACTCAGTCACCAGCGGTAAATACATCGTCAGCCATTAGTCAAAATAGGG
ATACCAGCACACCAGATCAAGCGCTGGCTGAGAGTGTTCTCACAGACTCAGTGCGTTCTCAACTTGGTGGAAAAATCGAG
TGGAATGGGGCTGGTGCCTTCATCATCAATGAAAATCAAACAAACTTAGACGCCAAAGTTTCGAGTGTCCCTTATGCGGA
TAATAAAACGAAGATGGTTCAGGGGCAGACGGTTCCAACAGTTGCCAATGCCTTGCTTGCCAAATCGACCCGCCAGTATA
AATCACGGGAAGAAACAGGGAATGCGTCTACTTCTTGGGTTCCTGCTGGTTGGCACCAAGTCAAACATCTATCAGGTGAC
TATAATCATGCAGTGGATCGCGGACATCTCTTGGCTTACTCTCTAATCGGTGGCTTAAAGGGCTTTGATGCTTCCACTAG
CAATCCAGCCAATATCGCAGTCCAGACAGCTTGGGCCAATCAGGCCAATAAAGACAACTCGACGGGGCAGAATTACTATG
AAACTCAGATTCGTCGTGCCTTGGATCAGAATAAGCGAGTCCGTTATCGTGTCACCTTGATCTATGCTTCGGAAAATGAT
CTGGTGTCCTCTGGCTCGCATTTAGAAGCTAAGTCCAGCGATGGAAGTTTGGAATTCAATGTTTTTGTCCCAAATGTCCA
GTCAGGAATTGTCCTTGATTATCGCACTGGCAAAGTGAGCATTAGATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(85-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

68.03

95.39

0.649
  endA Streptococcus pneumoniae D39

68.03

95.39

0.649
  endA Streptococcus pneumoniae R6

68.03

95.39

0.649
  endA Streptococcus pneumoniae TIGR4

68.03

95.39

0.649