Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   HBA50_RS02100 Genome accession   NZ_CP050133
Coordinates   405278..407236 (+) Length   652 a.a.
NCBI ID   WP_045500722.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 400278..412236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS02080 (HBA50_02080) sufU 401035..401472 (+) 438 WP_045500714.1 Fe-S cluster assembly sulfur transfer protein SufU -
  HBA50_RS02085 (HBA50_02085) sufB 401490..402902 (+) 1413 WP_045500716.1 Fe-S cluster assembly protein SufB -
  HBA50_RS02090 (HBA50_02090) - 403039..403607 (+) 569 Protein_401 hypothetical protein -
  HBA50_RS02095 (HBA50_02095) pbp3 403721..404998 (-) 1278 WP_045500718.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  HBA50_RS02100 (HBA50_02100) amiA3 405278..407236 (+) 1959 WP_045500722.1 peptide ABC transporter substrate-binding protein Regulator
  HBA50_RS02110 (HBA50_02110) serS 407521..408798 (-) 1278 WP_045500724.1 serine--tRNA ligase -
  HBA50_RS02115 (HBA50_02115) - 409012..409383 (-) 372 WP_005591777.1 DUF956 family protein -
  HBA50_RS02120 (HBA50_02120) - 409454..410365 (-) 912 WP_045500727.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  HBA50_RS02125 (HBA50_02125) - 410384..411194 (-) 811 Protein_407 PTS mannose/fructose/sorbose transporter subunit IIC -
  HBA50_RS02130 (HBA50_02130) - 411230..412219 (-) 990 WP_045500729.1 PTS sugar transporter subunit IIB -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72671.92 Da        Isoelectric Point: 4.7571

>NTDB_id=430197 HBA50_RS02100 WP_045500722.1 405278..407236(+) (amiA3) [Streptococcus cristatus ATCC 51100]
MKKSKWLAITGLVAASALFLAACGKSSTSSAKTYSYVYNTDPDTLDYVNSNRASTSDVIANLVDGLLENDQYGNLIPSLA
EDWTVSKDGLTYTYKLRKDAKWYTAEGEEYAAVKAQDFVTGLKHAADEKSEALPIVQNSIKGLDAYIKGESNDFSTVGVK
AIDDYTVQYTLNQPESYWNSKTTMGILFPINEEFLKKEGKDFGTVKPSGILYNGPYVLKSFTSKSVIEYSKNQNYWDKDN
VKIEDVKLTYYDGSDQESLIRNFTDGAYTQARLYPTSSNYASVEKKYKDNIIFTPQNSTSYFYAFNLNRQAYSHTSKTDV
QKAASKEAIQNKDFRQAINFAFDRKSFGAQMNGNEGATKIIRSLLVPPSFVQVDGKDFSDVVESQLASYGDEWQGVKLAD
AQDSIYNPDKAKAEFAKAKEALQAQGVEFPIHLDVPVDQTDKIMVQRTNSFKQSVEAALGQENVVIDVHQMSSDDFDNST
YFAETAAQKDYDLNMSGWSADYQDPVTYLNIFNPETGDILDNIGLTKGQNQDLASKVGLTDYKALLDQADAEKQDTNARY
TKYAAAQAWLTDSSIVIPSISAGASPMVQKVVPFTKAYSYVGIKGDVYVFKGMELQDKVLTVADYQKALKKWEKEKEESN
KKAQEELASHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=430197 HBA50_RS02100 WP_045500722.1 405278..407236(+) (amiA3) [Streptococcus cristatus ATCC 51100]
ATGAAAAAATCTAAATGGTTGGCTATTACTGGTTTGGTTGCAGCATCAGCGCTATTCTTAGCTGCTTGTGGCAAGTCAAG
CACCAGCTCGGCAAAGACATATTCTTATGTCTATAATACAGATCCAGATACATTGGATTATGTAAACTCCAATCGCGCCT
CCACTTCTGACGTTATTGCCAATTTGGTAGACGGTCTTTTAGAAAATGATCAATATGGGAATCTTATCCCTTCATTGGCT
GAAGACTGGACTGTGTCTAAAGATGGCCTAACTTATACTTATAAGTTGCGTAAGGATGCTAAATGGTACACAGCAGAAGG
TGAAGAGTATGCTGCTGTCAAGGCGCAAGACTTTGTCACAGGGCTCAAGCACGCTGCAGATGAAAAATCAGAAGCCTTAC
CAATCGTGCAAAACTCTATCAAGGGCTTGGATGCTTATATCAAAGGAGAAAGCAATGATTTCTCTACTGTCGGTGTTAAG
GCGATCGACGACTATACGGTTCAATACACCCTGAATCAGCCAGAAAGCTACTGGAATTCTAAGACAACGATGGGCATTCT
CTTCCCGATTAACGAAGAATTCCTGAAGAAAGAAGGCAAAGACTTTGGTACCGTGAAACCTTCCGGTATCCTCTACAATG
GTCCATATGTATTAAAGTCATTTACTTCTAAGTCTGTTATCGAATATTCTAAAAACCAAAACTATTGGGATAAGGACAAT
GTGAAGATCGAAGATGTCAAGTTGACTTACTACGATGGTTCTGACCAAGAGTCATTGATCCGTAACTTTACTGATGGTGC
TTACACACAAGCTCGTCTCTATCCGACTAGCTCAAACTACGCATCAGTAGAAAAGAAATACAAAGACAACATCATTTTTA
CTCCACAAAACTCAACTAGCTATTTCTATGCCTTTAACTTGAATCGTCAGGCTTATAGCCACACTTCTAAGACAGATGTC
CAAAAAGCTGCCAGCAAAGAAGCAATTCAAAATAAAGACTTCCGTCAAGCAATCAACTTTGCTTTTGACCGTAAATCCTT
TGGTGCCCAGATGAATGGTAATGAAGGAGCAACGAAAATTATCAGAAGCTTGCTTGTGCCTCCTAGTTTTGTGCAAGTAG
ATGGCAAGGACTTCTCAGATGTCGTTGAATCACAACTGGCTTCTTATGGGGATGAATGGCAAGGTGTCAAATTAGCTGAT
GCTCAAGACAGCATTTACAACCCAGATAAGGCCAAGGCAGAATTTGCTAAGGCAAAAGAAGCTTTGCAAGCACAGGGAGT
TGAATTCCCAATTCATCTAGATGTACCAGTTGACCAGACAGATAAAATCATGGTGCAGCGGACCAACTCTTTCAAACAAT
CTGTTGAGGCAGCTCTAGGCCAAGAAAACGTTGTGATTGACGTGCACCAAATGTCATCAGACGATTTTGATAACTCTACT
TACTTCGCAGAAACAGCTGCCCAAAAGGACTATGACCTCAATATGTCTGGTTGGTCAGCGGACTATCAAGATCCAGTGAC
TTATTTGAATATCTTTAACCCAGAAACAGGGGATATCTTGGACAATATTGGTTTGACAAAAGGCCAAAACCAAGACCTTG
CTTCTAAGGTTGGTTTAACGGACTACAAAGCGCTTTTGGATCAGGCAGATGCAGAAAAGCAAGATACCAATGCTCGCTAT
ACCAAGTATGCAGCAGCGCAGGCTTGGTTAACAGATAGTTCTATTGTCATCCCGTCTATTTCTGCAGGTGCTTCACCAAT
GGTTCAAAAGGTCGTACCATTTACCAAAGCCTACTCTTATGTAGGTATCAAGGGTGATGTCTATGTATTTAAGGGAATGG
AGCTTCAAGATAAGGTTCTGACAGTAGCTGATTATCAAAAGGCTTTGAAAAAATGGGAAAAAGAAAAAGAAGAATCAAAT
AAAAAAGCTCAAGAAGAGTTAGCAAGTCACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

56.317

100

0.567
  amiA3 Streptococcus thermophilus LMG 18311

56.231

100

0.567
  amiA Streptococcus salivarius strain HSISS4

56.402

100

0.567