Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PECL_RS00045 | Genome accession | NC_016605 |
| Coordinates | 10097..10618 (+) | Length | 173 a.a. |
| NCBI ID | WP_014214545.1 | Uniprot ID | G8PE86 |
| Organism | Pediococcus claussenii ATCC BAA-344 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5097..15618
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PECL_RS00035 (PECL_7) | gyrA | 7083..9578 (+) | 2496 | WP_014214543.1 | DNA gyrase subunit A | - |
| PECL_RS00040 (PECL_8) | rpsF | 9757..10047 (+) | 291 | WP_014214544.1 | 30S ribosomal protein S6 | - |
| PECL_RS00045 (PECL_9) | ssb | 10097..10618 (+) | 522 | WP_014214545.1 | single-stranded DNA-binding protein | Machinery gene |
| PECL_RS00050 (PECL_10) | rpsR | 10638..10874 (+) | 237 | WP_014214546.1 | 30S ribosomal protein S18 | - |
| PECL_RS00055 (PECL_11) | - | 11068..13071 (+) | 2004 | WP_014214547.1 | DHH family phosphoesterase | - |
| PECL_RS00060 (PECL_12) | rplI | 13078..13530 (+) | 453 | WP_014214548.1 | 50S ribosomal protein L9 | - |
| PECL_RS00065 (PECL_13) | dnaB | 13554..14951 (+) | 1398 | WP_014214549.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 19043.53 Da Isoelectric Point: 4.4862
>NTDB_id=43014 PECL_RS00045 WP_014214545.1 10097..10618(+) (ssb) [Pediococcus claussenii ATCC BAA-344]
MINRTVLVGRLTRDPELRYTGSGAAVVSFTLAVNRQFTNQQGEREADFINCVMWRKSAENFANFTRKGSLVGIDGRIQTR
NYENQQGQRVYVTEVVADNFSLLESRSQSEQRQSNEGGFSQPAPSNNNQSSGNNNPFDAGQNSNGAQQPSSNPNDPFADG
GQSIDISDDDLPF
MINRTVLVGRLTRDPELRYTGSGAAVVSFTLAVNRQFTNQQGEREADFINCVMWRKSAENFANFTRKGSLVGIDGRIQTR
NYENQQGQRVYVTEVVADNFSLLESRSQSEQRQSNEGGFSQPAPSNNNQSSGNNNPFDAGQNSNGAQQPSSNPNDPFADG
GQSIDISDDDLPF
Nucleotide
Download Length: 522 bp
>NTDB_id=43014 PECL_RS00045 WP_014214545.1 10097..10618(+) (ssb) [Pediococcus claussenii ATCC BAA-344]
ATGATTAACCGAACAGTACTCGTTGGACGCTTAACACGAGATCCTGAGTTACGATACACAGGCAGTGGCGCAGCTGTTGT
TTCTTTCACACTTGCTGTTAACCGGCAATTCACTAACCAACAAGGTGAACGTGAAGCCGATTTTATTAACTGCGTAATGT
GGAGAAAGTCAGCTGAAAACTTTGCTAATTTTACTCGCAAAGGTTCATTAGTGGGAATTGACGGCCGTATTCAAACGCGT
AACTACGAAAACCAACAAGGTCAACGTGTTTATGTTACTGAAGTAGTTGCCGATAATTTCTCACTTCTTGAATCTCGTTC
ACAATCTGAACAACGTCAGAGTAACGAAGGCGGATTTAGTCAGCCTGCCCCTTCTAACAACAATCAATCGTCAGGTAATA
ACAATCCATTTGACGCGGGTCAGAACAGTAATGGTGCACAACAACCTAGTTCTAATCCGAATGATCCATTTGCGGATGGT
GGTCAATCGATTGATATTTCTGATGATGATTTACCATTCTAA
ATGATTAACCGAACAGTACTCGTTGGACGCTTAACACGAGATCCTGAGTTACGATACACAGGCAGTGGCGCAGCTGTTGT
TTCTTTCACACTTGCTGTTAACCGGCAATTCACTAACCAACAAGGTGAACGTGAAGCCGATTTTATTAACTGCGTAATGT
GGAGAAAGTCAGCTGAAAACTTTGCTAATTTTACTCGCAAAGGTTCATTAGTGGGAATTGACGGCCGTATTCAAACGCGT
AACTACGAAAACCAACAAGGTCAACGTGTTTATGTTACTGAAGTAGTTGCCGATAATTTCTCACTTCTTGAATCTCGTTC
ACAATCTGAACAACGTCAGAGTAACGAAGGCGGATTTAGTCAGCCTGCCCCTTCTAACAACAATCAATCGTCAGGTAATA
ACAATCCATTTGACGCGGGTCAGAACAGTAATGGTGCACAACAACCTAGTTCTAATCCGAATGATCCATTTGCGGATGGT
GGTCAATCGATTGATATTTCTGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
69.54 |
100 |
0.699 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
60 |
100 |
0.607 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
61.272 |
0.37 |