Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HAQ15_RS00040 Genome accession   NZ_CP050079
Coordinates   9649..10170 (+) Length   173 a.a.
NCBI ID   WP_002829316.1    Uniprot ID   A0AAN5YAY2
Organism   Pediococcus acidilactici strain PMC48     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4649..15170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAQ15_RS00030 (HAQ15_00030) gyrA 6620..9139 (+) 2520 WP_171461283.1 DNA gyrase subunit A -
  HAQ15_RS00035 (HAQ15_00035) rpsF 9325..9612 (+) 288 WP_002829317.1 30S ribosomal protein S6 -
  HAQ15_RS00040 (HAQ15_00040) ssb 9649..10170 (+) 522 WP_002829316.1 single-stranded DNA-binding protein Machinery gene
  HAQ15_RS00045 (HAQ15_00045) rpsR 10200..10436 (+) 237 WP_002829315.1 30S ribosomal protein S18 -
  HAQ15_RS00050 (HAQ15_00050) - 10649..12646 (+) 1998 WP_002829314.1 DHH family phosphoesterase -
  HAQ15_RS00055 (HAQ15_00055) rplI 12652..13104 (+) 453 WP_002830768.1 50S ribosomal protein L9 -
  HAQ15_RS00060 (HAQ15_00060) dnaB 13154..14551 (+) 1398 WP_008841973.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18874.39 Da        Isoelectric Point: 4.6207

>NTDB_id=429940 HAQ15_RS00040 WP_002829316.1 9649..10170(+) (ssb) [Pediococcus acidilactici strain PMC48]
MINRAVLVGRLTRDPELRYTSSGAAVVSFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVADNFSLLESRSASERRQENEGFNNGQSAPSQSSAGNPFDSGQANNNGAASQPNNSNPNDPFANG
GQSIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=429940 HAQ15_RS00040 WP_002829316.1 9649..10170(+) (ssb) [Pediococcus acidilactici strain PMC48]
ATGATTAATCGTGCCGTACTAGTTGGACGTTTAACAAGAGATCCTGAACTACGATATACAAGTAGTGGCGCTGCCGTAGT
TAGTTTTACCGTGGCGGTTAACCGTCAGTTTACTAACTCACAGGGTGAACGCGAAGCGGATTTCATCAACTGTGTAATGT
GGCGGAAAGCGGCGGAAAACTTCGCCAACTTCACGCGCAAAGGCTCTCTAGTAGGTATCGACGGTCGGATCCAAACCCGT
TCGTACGAAAACCAACAAGGACAACGAGTATACGTTACCGAAGTTGTTGCGGATAACTTCTCACTTCTTGAATCCCGTTC
GGCTTCCGAACGCCGTCAAGAAAATGAAGGCTTCAACAACGGTCAATCTGCCCCTTCACAATCATCTGCTGGAAATCCTT
TTGACAGTGGTCAAGCGAATAACAATGGTGCTGCATCGCAGCCTAACAATTCGAACCCGAACGATCCGTTTGCAAATGGC
GGACAGTCAATTGATATTTCTGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

69.318

100

0.705
  ssbA Bacillus subtilis subsp. subtilis str. 168

60

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

61.272

0.376