Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   G8O91_RS14175 Genome accession   NZ_CP050026
Coordinates   2787654..2788898 (-) Length   414 a.a.
NCBI ID   WP_003732285.1    Uniprot ID   -
Organism   Listeria monocytogenes strain MB5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2782654..2793898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8O91_RS14150 - 2782673..2783035 (-) 363 WP_003744056.1 RicAFT regulatory complex protein RicA family protein -
  G8O91_RS14155 - 2783052..2783855 (-) 804 WP_003732288.1 TIGR00282 family metallophosphoesterase -
  G8O91_RS14160 - 2783861..2784358 (-) 498 WP_010990112.1 GNAT family N-acetyltransferase -
  G8O91_RS14165 rny 2784472..2786034 (-) 1563 WP_003721904.1 ribonuclease Y -
  G8O91_RS14170 recA 2786335..2787381 (-) 1047 WP_003732286.1 recombinase RecA Machinery gene
  G8O91_RS14175 cinA 2787654..2788898 (-) 1245 WP_003732285.1 competence/damage-inducible protein A Machinery gene
  G8O91_RS14180 pgsA 2788967..2789545 (-) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G8O91_RS14185 - 2789635..2790564 (-) 930 WP_003732284.1 RodZ family helix-turn-helix domain-containing protein -
  G8O91_RS14190 ymfI 2790615..2791346 (-) 732 WP_003723919.1 elongation factor P 5-aminopentanone reductase -
  G8O91_RS14195 yfmH 2791438..2792724 (-) 1287 WP_014600815.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45675.93 Da        Isoelectric Point: 4.8685

>NTDB_id=429455 G8O91_RS14175 WP_003732285.1 2787654..2788898(-) (cinA) [Listeria monocytogenes strain MB5]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPTRLKEVIEIAEKRSDILIFTGGLGPTEDDITKQ
ILADHLQKQLVEDEYHMNKINEYFASRNRTMTENNKLQAVIIKDSVVLNNDYGFAAGMYLKENNHTYVLLPGPPSEMKPM
FTKYANPLLLSENGNQNILESKIMRFFGIGESQLAADLNDLIVNQVNPTIATYAGDNEVVVRITATAKTKEEASSLVKDT
EEEILRRDGTFLYGYGEVSLPELVTAMLLEKELTISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGHETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=429455 G8O91_RS14175 WP_003732285.1 2787654..2788898(-) (cinA) [Listeria monocytogenes strain MB5]
ATGGCAAGTGCAGAAATCATTGCAGTAGGAACTGAACTATTACTTGGGCAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCTGACGGAATATATGTATATCATCATACGGTAGTTGGAGATAATCCAACACGTTTAAAAGAAGTAA
TCGAAATTGCTGAAAAGCGCAGTGATATTTTAATCTTTACTGGGGGACTTGGACCAACTGAAGATGATATAACAAAACAA
ATCTTAGCTGATCATTTACAAAAACAGTTAGTAGAAGATGAATATCATATGAATAAAATTAATGAGTATTTCGCTTCCAG
AAACAGAACCATGACCGAAAACAACAAATTACAAGCGGTTATTATTAAAGATTCCGTGGTATTAAATAATGACTACGGCT
TTGCAGCTGGGATGTACTTAAAAGAAAATAACCATACTTACGTTTTGTTACCAGGACCACCATCTGAAATGAAGCCAATG
TTTACAAAATATGCTAACCCACTTCTTTTAAGTGAAAATGGCAATCAAAATATTTTAGAATCCAAAATCATGCGTTTTTT
TGGTATTGGAGAATCGCAATTAGCTGCTGATTTAAACGATTTGATTGTTAATCAAGTCAACCCAACGATTGCGACATATG
CTGGTGATAATGAAGTCGTGGTTCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGTTCTCTTGTGAAGGATACA
GAGGAGGAAATATTGCGCCGAGATGGCACTTTTTTATATGGATATGGAGAGGTTTCATTGCCTGAATTAGTTACGGCGAT
GTTGCTTGAAAAAGAGCTTACCATCTCTGCTGCAGAAAGTTTTACTGCTGGTTTATTTCAAGCGGAAATTGCTCGATTTC
CTGGTATTTCGAAAATTTTCAAAGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCACCT
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCTGAATGTGCGAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGCCCGGATAGTCTAGAAGGCCATCCTGCTGGCACTATTTGGATTGGGC
TGAGCGTTAAAGGTCATGAAACAGAGGCTTTTCAGTTTGTTTATGGAAGAGATCGAAACCATAATCGCCGACGTGCCGTA
AAACAAGGCTTTCAGTTAATTAAGCAATTTTTAGACGCAAATTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.611

98.792

0.5
  cinA Streptococcus mitis SK321

49.165

100

0.498
  cinA Streptococcus pneumoniae TIGR4

48.571

100

0.493
  cinA Streptococcus mitis NCTC 12261

48.449

100

0.49
  cinA Streptococcus mutans UA159

49.272

99.517

0.49
  cinA Streptococcus pneumoniae Rx1

48.333

100

0.49
  cinA Streptococcus pneumoniae R6

48.333

100

0.49
  cinA Streptococcus pneumoniae D39

48.095

100

0.488
  cinA Streptococcus suis isolate S10

38.835

99.517

0.386