Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VFU_RS04270 Genome accession   NC_016602
Coordinates   888463..889689 (-) Length   408 a.a.
NCBI ID   WP_014204459.1    Uniprot ID   -
Organism   Vibrio furnissii NCTC 11218     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 883463..894689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFU_RS04245 (vfu_A00865) parC 883529..885802 (+) 2274 WP_014204456.1 DNA topoisomerase IV subunit A -
  VFU_RS04250 (vfu_A00866) yacG 885903..886100 (-) 198 WP_004729092.1 DNA gyrase inhibitor YacG -
  VFU_RS04255 (vfu_A00867) zapD 886158..886898 (-) 741 WP_004729090.1 cell division protein ZapD -
  VFU_RS04260 (vfu_A00868) coaE 886931..887539 (-) 609 WP_014204457.1 dephospho-CoA kinase -
  VFU_RS04265 (vfu_A00869) pilD 887542..888411 (-) 870 WP_014204458.1 prepilin peptidase Machinery gene
  VFU_RS04270 (vfu_A00870) pilC 888463..889689 (-) 1227 WP_014204459.1 type II secretion system F family protein Machinery gene
  VFU_RS04275 (vfu_A00871) pilB 889768..891456 (-) 1689 WP_014204460.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VFU_RS04280 (vfu_A00872) - 891463..891912 (-) 450 WP_014204461.1 pilin -
  VFU_RS04285 (vfu_A00873) nadC 892159..893046 (-) 888 WP_014204462.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VFU_RS04290 (vfu_A00874) ampD 893197..893748 (+) 552 WP_014204463.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  VFU_RS04295 (vfu_A00875) fldB 893770..894291 (-) 522 WP_004729075.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44783.05 Da        Isoelectric Point: 10.5674

>NTDB_id=42936 VFU_RS04270 WP_014204459.1 888463..889689(-) (pilC) [Vibrio furnissii NCTC 11218]
MKPNKAAELKNFRWKGINSSGRKVAGHTLAISEIEVRDKLKEQHIQVKKIKKGSISLLTRLTHRVKTRDITLLTRQLSTM
LTTGVPIVQALKLVGDNHRKAEMKSILAQVTKGVEAGTPMSKAMRTASPHFDALYVDLIATGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPAMVMLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSLWGVLASSAGLLA
LKTARNKSLVFRLKTSRLGLRFPVIGAVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQEVHRHTAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=42936 VFU_RS04270 WP_014204459.1 888463..889689(-) (pilC) [Vibrio furnissii NCTC 11218]
ATGAAACCAAATAAAGCTGCCGAATTGAAAAACTTCCGCTGGAAAGGCATCAACAGCTCCGGGCGAAAAGTTGCCGGACA
CACCTTGGCCATCAGTGAAATTGAGGTGCGCGACAAGCTCAAAGAGCAGCACATTCAGGTGAAGAAGATCAAAAAGGGCA
GCATTTCACTGCTGACTCGCCTCACCCACCGCGTCAAGACTCGCGACATCACCCTGCTCACACGCCAGCTTTCCACCATG
CTGACTACAGGTGTACCCATCGTTCAAGCGTTGAAACTGGTTGGCGACAATCATCGCAAAGCAGAAATGAAATCGATTCT
GGCCCAAGTCACCAAAGGGGTAGAAGCAGGCACCCCGATGTCCAAAGCGATGCGCACTGCCAGCCCACATTTTGATGCGC
TGTACGTTGACCTCATAGCCACCGGCGAACAATCCGGTAATTTGGCCGAAGTGTTTGAGCGCCTTGCTACCTATCGAGAA
AAAAGCGAACAACTGCGCGCCAAAGTGATCAAGGCGCTGATCTATCCGGCGATGGTGATGTTGGTCGCGTTGGGCGTCTC
TTATCTGATGCTGACCATGGTCATTCCCGAGTTTGAAAGCATGTTCAAAGGCTTTGGCGCAGAGCTTCCTTGGTTTACCC
AGCAAATTCTTAAACTCTCCCACGGCGTGCAAGCCTATAGCCTATGGGGCGTACTGGCGAGCAGCGCTGGCCTATTGGCG
CTCAAAACCGCGCGCAACAAATCATTGGTCTTTCGATTGAAAACCAGCCGCCTTGGCTTGCGATTTCCTGTTATCGGCGC
GGTATTAGCCAAGGCTGCCATTGCCAAATTCAGCCGTACATTGGCCACCAGTTTTAGCGCCGGCATACCGATTCTGGCCA
GTTTAAAAACCACCGCCAAAACCGCCGGCAACGTCCATTTTGAAACCGCGATTCAAGAGGTACATCGCCATACCGCGGCA
GGCATGCCGATGTACATCGCCATGCGCAATACCGACGCATTTCCGGAGATGGTGCTGCAAATGGTGATGATTGGCGAAGA
GTCGGGCAAGCTTGACGACATGCTGAACAAAGTCGCGACTATTTATGAGTTTGAAGTCGACAATACCGTGGACAATCTGG
GTAAAATTCTCGAGCCGCTGATCATCGTCTTTCTGGGAGTGGTCGTTGGCGGGCTGGTGGTTGCGATGTACCTCCCCATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

84.804

100

0.848
  pilC Vibrio campbellii strain DS40M4

73.697

98.775

0.728
  pilC Pseudomonas stutzeri DSM 10701

42.469

99.265

0.422
  pilC Acinetobacter baumannii D1279779

41.422

100

0.414
  pilC Legionella pneumophila strain ERS1305867

42.105

97.794

0.412
  pilG Neisseria gonorrhoeae MS11

40

100

0.402
  pilC Acinetobacter baylyi ADP1

40.196

100

0.402
  pilG Neisseria meningitidis 44/76-A

38.67

99.51

0.385

Multiple sequence alignment