Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | VFU_RS03110 | Genome accession | NC_016602 |
| Coordinates | 654972..655562 (+) | Length | 196 a.a. |
| NCBI ID | WP_014204335.1 | Uniprot ID | - |
| Organism | Vibrio furnissii NCTC 11218 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 649972..660562
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VFU_RS03095 (vfu_A00627) | oxyR | 650383..651279 (+) | 897 | WP_014204332.1 | DNA-binding transcriptional regulator OxyR | - |
| VFU_RS03100 (vfu_A00628) | - | 651353..653833 (-) | 2481 | WP_014204333.1 | penicillin-binding protein 1A | - |
| VFU_RS03105 (vfu_A00629) | pilM | 653978..654982 (+) | 1005 | WP_014204334.1 | type IV pilus assembly protein PilM | Machinery gene |
| VFU_RS03110 (vfu_A00630) | pilN | 654972..655562 (+) | 591 | WP_014204335.1 | PilN domain-containing protein | Machinery gene |
| VFU_RS03115 (vfu_A00631) | pilO | 655555..656145 (+) | 591 | WP_014204336.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| VFU_RS03120 (vfu_A00632) | pilP | 656135..656647 (+) | 513 | WP_041942470.1 | pilus assembly protein PilP | Machinery gene |
| VFU_RS03125 (vfu_A00633) | pilQ | 656672..658396 (+) | 1725 | WP_041942471.1 | type IV pilus secretin PilQ | Machinery gene |
| VFU_RS03130 (vfu_A00634) | aroK | 658584..659102 (+) | 519 | WP_004728569.1 | shikimate kinase AroK | - |
| VFU_RS03135 (vfu_A00635) | aroB | 659130..660215 (+) | 1086 | WP_004728570.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22056.22 Da Isoelectric Point: 8.9883
>NTDB_id=42930 VFU_RS03110 WP_014204335.1 654972..655562(+) (pilN) [Vibrio furnissii NCTC 11218]
MVHDINLMPWREARREAHKRRFAGLCVLAVLIALGLQWGAGAYIDRQTQVQQQRLDFLNQHIRDLDNQIAALKVSEQEHK
ALLTRLSVVESLQQKRNKTTEFMNLMPQLIPEGVYVDKIKMNGQEIELSGISDSTARLATMLDNLEKSDQLSEVGMHSIV
AGNRRFGKQFQSFKVSFLFHASSQQAVSADTGGAHG
MVHDINLMPWREARREAHKRRFAGLCVLAVLIALGLQWGAGAYIDRQTQVQQQRLDFLNQHIRDLDNQIAALKVSEQEHK
ALLTRLSVVESLQQKRNKTTEFMNLMPQLIPEGVYVDKIKMNGQEIELSGISDSTARLATMLDNLEKSDQLSEVGMHSIV
AGNRRFGKQFQSFKVSFLFHASSQQAVSADTGGAHG
Nucleotide
Download Length: 591 bp
>NTDB_id=42930 VFU_RS03110 WP_014204335.1 654972..655562(+) (pilN) [Vibrio furnissii NCTC 11218]
ATGGTGCATGACATCAATTTAATGCCGTGGCGAGAAGCGCGGCGTGAAGCTCATAAACGCCGTTTTGCCGGTTTGTGCGT
GCTGGCGGTGCTGATCGCGTTGGGACTGCAATGGGGCGCAGGAGCGTATATCGACCGTCAAACACAAGTGCAGCAACAAC
GGCTGGATTTTCTCAACCAACACATTCGTGACTTAGACAACCAAATTGCGGCGCTGAAGGTGAGCGAGCAAGAGCATAAA
GCGCTGCTGACCCGCTTGTCGGTGGTGGAGTCGTTGCAGCAGAAACGCAACAAGACCACTGAGTTCATGAACTTGATGCC
CCAACTGATCCCGGAAGGCGTCTACGTCGACAAAATCAAAATGAACGGTCAGGAAATTGAGCTGAGTGGCATCAGCGACA
GCACCGCGCGGCTGGCAACCATGCTCGATAATTTGGAGAAATCCGACCAACTGTCTGAGGTCGGTATGCATTCGATTGTG
GCGGGTAACCGTCGGTTTGGTAAGCAATTTCAGAGTTTTAAAGTGTCGTTCTTGTTCCACGCTTCATCGCAGCAAGCGGT
GAGTGCTGATACCGGAGGTGCCCATGGCTAA
ATGGTGCATGACATCAATTTAATGCCGTGGCGAGAAGCGCGGCGTGAAGCTCATAAACGCCGTTTTGCCGGTTTGTGCGT
GCTGGCGGTGCTGATCGCGTTGGGACTGCAATGGGGCGCAGGAGCGTATATCGACCGTCAAACACAAGTGCAGCAACAAC
GGCTGGATTTTCTCAACCAACACATTCGTGACTTAGACAACCAAATTGCGGCGCTGAAGGTGAGCGAGCAAGAGCATAAA
GCGCTGCTGACCCGCTTGTCGGTGGTGGAGTCGTTGCAGCAGAAACGCAACAAGACCACTGAGTTCATGAACTTGATGCC
CCAACTGATCCCGGAAGGCGTCTACGTCGACAAAATCAAAATGAACGGTCAGGAAATTGAGCTGAGTGGCATCAGCGACA
GCACCGCGCGGCTGGCAACCATGCTCGATAATTTGGAGAAATCCGACCAACTGTCTGAGGTCGGTATGCATTCGATTGTG
GCGGGTAACCGTCGGTTTGGTAAGCAATTTCAGAGTTTTAAAGTGTCGTTCTTGTTCCACGCTTCATCGCAGCAAGCGGT
GAGTGCTGATACCGGAGGTGCCCATGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
69.543 |
100 |
0.699 |
| pilN | Vibrio campbellii strain DS40M4 |
62.842 |
93.367 |
0.587 |