Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   IF766_RS07825 Genome accession   NZ_CP062402
Coordinates   1638542..1639144 (-) Length   200 a.a.
NCBI ID   WP_240052870.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_056     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1633542..1644144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF766_RS07805 (IF766_07770) yajC 1635038..1635298 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  IF766_RS07810 (IF766_07775) tgt 1635317..1636456 (-) 1140 WP_001112049.1 tRNA guanosine(34) transglycosylase Tgt -
  IF766_RS07815 (IF766_07780) queA 1636479..1637504 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  IF766_RS07820 (IF766_07785) ruvB 1637506..1638510 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  IF766_RS07825 (IF766_07790) ruvA 1638542..1639144 (-) 603 WP_240052870.1 Holliday junction branch migration protein RuvA Machinery gene
  IF766_RS07830 (IF766_07795) - 1639158..1639613 (-) 456 WP_000368902.1 ACT domain-containing protein -
  IF766_RS07835 (IF766_07800) obgE 1639626..1640918 (-) 1293 WP_000496103.1 GTPase ObgE -
  IF766_RS07840 (IF766_07805) rpmA 1641931..1642215 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  IF766_RS07845 (IF766_07810) - 1642227..1642547 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  IF766_RS07850 (IF766_07815) rplU 1642553..1642861 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  IF766_RS07855 (IF766_07820) mreD 1643223..1643753 (-) 531 WP_001259925.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22292.54 Da        Isoelectric Point: 6.0240

>NTDB_id=429193 IF766_RS07825 WP_240052870.1 1638542..1639144(-) (ruvA) [Staphylococcus aureus strain NAS_OP_056]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSMVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=429193 IF766_RS07825 WP_240052870.1 1638542..1639144(-) (ruvA) [Staphylococcus aureus strain NAS_OP_056]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGCAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGATGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(156-197)

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425