Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   GTCCBUS3UF5_RS12530 Genome accession   NC_016593
Coordinates   2520612..2520908 (-) Length   98 a.a.
NCBI ID   WP_011231915.1    Uniprot ID   U2X350
Organism   Geobacillus thermoleovorans CCB_US3_UF5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2515612..2525908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTCCBUS3UF5_RS12495 (GTCCBUS3UF5_27390) - 2516212..2517876 (+) 1665 WP_014196337.1 DEAD/DEAH box helicase -
  GTCCBUS3UF5_RS12500 (GTCCBUS3UF5_27400) - 2517863..2518657 (+) 795 WP_011231909.1 YqhG family protein -
  GTCCBUS3UF5_RS12505 (GTCCBUS3UF5_27410) - 2518760..2518939 (-) 180 WP_011231910.1 YqzE family protein -
  GTCCBUS3UF5_RS12510 (GTCCBUS3UF5_27420) comGG 2518986..2519375 (-) 390 WP_014196338.1 competence type IV pilus minor pilin ComGG -
  GTCCBUS3UF5_RS12515 (GTCCBUS3UF5_27430) comGF 2519450..2519896 (-) 447 WP_014196339.1 competence type IV pilus minor pilin ComGF -
  GTCCBUS3UF5_RS12520 (GTCCBUS3UF5_27440) - 2519875..2520201 (-) 327 WP_011231913.1 type II secretion system protein -
  GTCCBUS3UF5_RS12525 (GTCCBUS3UF5_27450) comGD 2520185..2520622 (-) 438 WP_011231914.1 competence type IV pilus minor pilin ComGD -
  GTCCBUS3UF5_RS12530 (GTCCBUS3UF5_27460) comGC 2520612..2520908 (-) 297 WP_011231915.1 competence type IV pilus major pilin ComGC Machinery gene
  GTCCBUS3UF5_RS12535 (GTCCBUS3UF5_27470) comGB 2521111..2522139 (-) 1029 WP_014196341.1 competence type IV pilus assembly protein ComGB -
  GTCCBUS3UF5_RS12540 (GTCCBUS3UF5_27480) comGA 2522136..2523209 (-) 1074 WP_011231917.1 competence type IV pilus ATPase ComGA Machinery gene
  GTCCBUS3UF5_RS12545 (GTCCBUS3UF5_27490) - 2523402..2524100 (+) 699 WP_011231918.1 helix-turn-helix transcriptional regulator -
  GTCCBUS3UF5_RS12550 (GTCCBUS3UF5_27500) - 2524259..2524501 (+) 243 WP_008879854.1 DUF2626 family protein -
  GTCCBUS3UF5_RS12555 (GTCCBUS3UF5_27510) - 2524585..2525718 (-) 1134 WP_020278526.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10749.59 Da        Isoelectric Point: 7.2422

>NTDB_id=42889 GTCCBUS3UF5_RS12530 WP_011231915.1 2520612..2520908(-) (comGC) [Geobacillus thermoleovorans CCB_US3_UF5]
MNQKGFTLIEMLIVMMVISVLLLIAIPNMTKHNSMINSKGCEAFLNTVQAQVKAYEMEHNKIPTVQELLAGRYIKSDKCP
NGHAIQISANGDVSESGS

Nucleotide


Download         Length: 297 bp        

>NTDB_id=42889 GTCCBUS3UF5_RS12530 WP_011231915.1 2520612..2520908(-) (comGC) [Geobacillus thermoleovorans CCB_US3_UF5]
ATGAATCAAAAAGGATTCACATTGATCGAAATGTTGATCGTTATGATGGTGATTTCTGTCCTGCTGCTGATTGCCATTCC
GAATATGACAAAGCACAACAGCATGATCAATTCGAAAGGATGCGAGGCGTTTTTGAACACCGTGCAAGCGCAGGTGAAAG
CGTATGAGATGGAGCATAACAAAATTCCGACGGTGCAGGAATTGCTCGCTGGCCGCTATATCAAGTCGGACAAATGTCCG
AACGGTCATGCGATCCAAATCAGCGCGAACGGCGATGTGAGTGAAAGTGGCTCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2X350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

52.747

92.857

0.49
  comGC Staphylococcus aureus MW2

41.935

94.898

0.398
  comGC Staphylococcus aureus N315

41.935

94.898

0.398

Multiple sequence alignment