Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   D7S_RS05050 Genome accession   NC_017846
Coordinates   1042912..1043721 (+) Length   269 a.a.
NCBI ID   WP_005549310.1    Uniprot ID   A0A5D0ENJ4
Organism   Aggregatibacter actinomycetemcomitans D7S-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1037912..1048721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7S_RS05040 (D7S_01095) - 1039271..1040116 (-) 846 WP_005540242.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  D7S_RS05045 (D7S_01096) - 1040211..1042778 (-) 2568 WP_005549313.1 penicillin-binding protein 1A -
  D7S_RS05050 (D7S_01097) comA 1042912..1043721 (+) 810 WP_005549310.1 hypothetical protein Machinery gene
  D7S_RS05055 (D7S_01098) - 1043732..1044250 (+) 519 WP_005549308.1 PilN domain-containing protein -
  D7S_RS05060 (D7S_01099) - 1044247..1044771 (+) 525 WP_005543969.1 hypothetical protein -
  D7S_RS05065 (D7S_01100) - 1044771..1045163 (+) 393 WP_005549304.1 hypothetical protein -
  D7S_RS05070 (D7S_01101) comE 1045184..1046593 (+) 1410 WP_014702362.1 type IV pilus secretin PilQ Machinery gene
  D7S_RS05075 (D7S_01102) aroK 1046807..1047334 (+) 528 WP_005543963.1 shikimate kinase AroK -
  D7S_RS05080 (D7S_01103) aroB 1047358..1048446 (+) 1089 WP_005543960.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 31305.90 Da        Isoelectric Point: 5.9306

>NTDB_id=42890 D7S_RS05050 WP_005549310.1 1042912..1043721(+) (comA) [Aggregatibacter actinomycetemcomitans D7S-1]
MFIRHIPTLQVGLWCRGETIDAAWIDPQNQPHFLRLGELELMELTSHLNRRFNHPRKKLAYKFITAIMPHQIWQKTLILP
HNLNLQECEQQCHFSLTNELPIPTEEVWYDYAATPLKQGFRLDIFAIRQQIATEYLQQLIPLQIDVLDNAAKAMLRAAEY
FLGHALPNNAVFLYQDETGLLAVQHKLQQTQTLFQTPGNLTALLAQYCQRYEEEPMQVFYYQAEKDAQAIPQSWHAIETE
LPFIALGNALWQRETPLKSTALFDADHNI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=42890 D7S_RS05050 WP_005549310.1 1042912..1043721(+) (comA) [Aggregatibacter actinomycetemcomitans D7S-1]
ATGTTTATTAGACACATTCCCACACTGCAAGTCGGTCTTTGGTGCCGTGGAGAAACCATCGACGCAGCGTGGATCGACCC
GCAAAATCAACCGCACTTTTTGCGCCTCGGCGAACTGGAATTAATGGAACTGACAAGCCATTTAAACCGTCGTTTTAACC
ATCCGCGCAAAAAATTAGCCTACAAATTTATTACCGCCATCATGCCCCATCAAATCTGGCAGAAAACCTTGATTTTGCCC
CATAACCTGAACCTTCAGGAATGTGAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGT
GTGGTATGACTACGCCGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAG
AATATTTGCAACAACTTATACCTTTACAAATTGACGTGTTGGACAACGCGGCAAAGGCGATGTTACGCGCGGCGGAATAT
TTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGCGGTACAACACAAATT
ACAGCAAACCCAAACGCTGTTCCAAACGCCGGGAAACCTAACCGCACTTTTGGCGCAATATTGCCAACGTTATGAAGAAG
AACCGATGCAGGTGTTCTATTATCAAGCCGAAAAAGACGCACAGGCGATACCGCAAAGCTGGCACGCCATTGAAACCGAG
CTACCGTTCATCGCGTTAGGTAACGCCTTGTGGCAACGGGAAACGCCGTTGAAATCCACCGCACTTTTTGATGCCGACCA
CAACATTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D0ENJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

40.927

96.283

0.394
  comA Haemophilus influenzae 86-028NP

40.927

96.283

0.394

Multiple sequence alignment