Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   G4G26_RS17980 Genome accession   NZ_CP049924
Coordinates   3510942..3512099 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain So1b     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3505942..3517099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G26_RS17950 (G4G26_18005) yvyF 3506195..3506614 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  G4G26_RS17955 (G4G26_18010) comFC 3506688..3507410 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  G4G26_RS17960 (G4G26_18015) comFB 3507374..3507670 (-) 297 WP_015483764.1 late competence protein ComFB -
  G4G26_RS17965 (G4G26_18020) comFA 3507730..3509121 (-) 1392 WP_038427948.1 ATP-dependent helicase ComFA Machinery gene
  G4G26_RS17970 (G4G26_18025) fakBA 3509227..3510072 (-) 846 WP_003244125.1 DegV family protein -
  G4G26_RS17975 (G4G26_18030) degU 3510170..3510859 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  G4G26_RS17980 (G4G26_18035) degS 3510942..3512099 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  G4G26_RS17985 (G4G26_18040) yvyE 3512316..3512969 (+) 654 WP_003227979.1 YigZ family protein -
  G4G26_RS17990 (G4G26_18045) tagV 3512969..3514144 (+) 1176 WP_072173456.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  G4G26_RS17995 (G4G26_18050) tagO 3514217..3515293 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  G4G26_RS18000 (G4G26_18055) tuaH 3515438..3516631 (-) 1194 WP_080481292.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=428763 G4G26_RS17980 WP_003227983.1 3510942..3512099(-) (degS) [Bacillus subtilis strain So1b]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=428763 G4G26_RS17980 WP_003227983.1 3510942..3512099(-) (degS) [Bacillus subtilis strain So1b]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAAGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATTGAGCTTGGCGATAAACTTGAAGTGCAAACTCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATCATTGAGGCGCAGGAAGAAGAGAGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1