Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   G4G26_RS17955 Genome accession   NZ_CP049924
Coordinates   3506688..3507410 (-) Length   240 a.a.
NCBI ID   WP_029725992.1    Uniprot ID   -
Organism   Bacillus subtilis strain So1b     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3501688..3512410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G26_RS17920 (G4G26_17975) fliW 3501827..3502258 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  G4G26_RS17925 (G4G26_17980) yviE 3502279..3502854 (-) 576 WP_015384781.1 DUF6470 family protein -
  G4G26_RS17930 (G4G26_17985) flgL 3502901..3503797 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  G4G26_RS17935 (G4G26_17990) flgK 3503808..3505331 (-) 1524 WP_015714798.1 flagellar hook-associated protein FlgK -
  G4G26_RS17940 (G4G26_17995) flgN 3505350..3505832 (-) 483 WP_014481048.1 flagellar protein FlgN -
  G4G26_RS17945 (G4G26_18000) flgM 3505848..3506114 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  G4G26_RS17950 (G4G26_18005) yvyF 3506195..3506614 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  G4G26_RS17955 (G4G26_18010) comFC 3506688..3507410 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  G4G26_RS17960 (G4G26_18015) comFB 3507374..3507670 (-) 297 WP_015483764.1 late competence protein ComFB -
  G4G26_RS17965 (G4G26_18020) comFA 3507730..3509121 (-) 1392 WP_038427948.1 ATP-dependent helicase ComFA Machinery gene
  G4G26_RS17970 (G4G26_18025) fakBA 3509227..3510072 (-) 846 WP_003244125.1 DegV family protein -
  G4G26_RS17975 (G4G26_18030) degU 3510170..3510859 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  G4G26_RS17980 (G4G26_18035) degS 3510942..3512099 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27433.73 Da        Isoelectric Point: 9.4913

>NTDB_id=428760 G4G26_RS17955 WP_029725992.1 3506688..3507410(-) (comFC) [Bacillus subtilis strain So1b]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=428760 G4G26_RS17955 WP_029725992.1 3506688..3507410(-) (comFC) [Bacillus subtilis strain So1b]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTATC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGTG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983