Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   G4G26_RS17975 Genome accession   NZ_CP049924
Coordinates   3510170..3510859 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain So1b     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3505170..3515859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G26_RS17940 (G4G26_17995) flgN 3505350..3505832 (-) 483 WP_014481048.1 flagellar protein FlgN -
  G4G26_RS17945 (G4G26_18000) flgM 3505848..3506114 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  G4G26_RS17950 (G4G26_18005) yvyF 3506195..3506614 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  G4G26_RS17955 (G4G26_18010) comFC 3506688..3507410 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  G4G26_RS17960 (G4G26_18015) comFB 3507374..3507670 (-) 297 WP_015483764.1 late competence protein ComFB -
  G4G26_RS17965 (G4G26_18020) comFA 3507730..3509121 (-) 1392 WP_038427948.1 ATP-dependent helicase ComFA Machinery gene
  G4G26_RS17970 (G4G26_18025) fakBA 3509227..3510072 (-) 846 WP_003244125.1 DegV family protein -
  G4G26_RS17975 (G4G26_18030) degU 3510170..3510859 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  G4G26_RS17980 (G4G26_18035) degS 3510942..3512099 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  G4G26_RS17985 (G4G26_18040) yvyE 3512316..3512969 (+) 654 WP_003227979.1 YigZ family protein -
  G4G26_RS17990 (G4G26_18045) tagV 3512969..3514144 (+) 1176 WP_072173456.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  G4G26_RS17995 (G4G26_18050) tagO 3514217..3515293 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=428762 G4G26_RS17975 WP_003219701.1 3510170..3510859(-) (degU) [Bacillus subtilis strain So1b]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=428762 G4G26_RS17975 WP_003219701.1 3510170..3510859(-) (degU) [Bacillus subtilis strain So1b]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1