Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   G8D99_RS14415 Genome accession   NZ_CP049916
Coordinates   3155943..3157394 (+) Length   483 a.a.
NCBI ID   WP_166327060.1    Uniprot ID   A0A6G8S7H2
Organism   Acinetobacter lanii strain 185     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3150943..3162394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8D99_RS14395 (G8D99_14395) thrC 3151197..3152336 (+) 1140 WP_166327054.1 threonine synthase -
  G8D99_RS14400 (G8D99_14400) - 3152407..3153459 (-) 1053 WP_166327056.1 D-alanyl-D-alanine carboxypeptidase family protein -
  G8D99_RS14405 (G8D99_14405) - 3153681..3154316 (+) 636 WP_166327058.1 response regulator -
  G8D99_RS14410 (G8D99_14410) pilS 3154345..3155919 (+) 1575 WP_406741497.1 sensor histidine kinase Regulator
  G8D99_RS14415 (G8D99_14415) pilR 3155943..3157394 (+) 1452 WP_166327060.1 sigma-54 dependent transcriptional regulator Regulator
  G8D99_RS14420 (G8D99_14420) - 3157450..3158631 (-) 1182 WP_166327061.1 S41 family peptidase -
  G8D99_RS14425 (G8D99_14425) gpmI 3158709..3160256 (-) 1548 WP_166327063.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  G8D99_RS14430 (G8D99_14430) lptG 3160401..3161471 (-) 1071 WP_166327065.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 54379.52 Da        Isoelectric Point: 6.1357

>NTDB_id=428654 G8D99_RS14415 WP_166327060.1 3155943..3157394(+) (pilR) [Acinetobacter lanii strain 185]
MAKQQPLVLLVDDEPDLCMLMQMTLSRMGIKTHMAHHLKQAQHFLGEYHYDACITDFNLPDGNGLELVKYVTQHYPKTPI
AVLTAYANMEIAIAALKAGAFDFVSKPINQQHLHQLLQKALHVPVVDESENQLALDERLLIGQSEAICKLRASIRKIARS
QAPVFITGESGTGKDVVANLIHQLSNRQEGPFIAINCGAISEELMERELFGHVKGCFPSADEDKLGLIQAADGGSLFLDE
ISELSMPMQAKLLRAVQEKKIRPLGSDKEIEVDFRIISASHQNIELLVQQGKFRQDLFFRIHVMDLLIAPLRERQQDILI
LAEHFIEKVCAEWRIEPKQLSTHAQKFLLSQYYAGNVRELRNMIERAITLSDEQSIEIEHLQSHTAQQNIEFNLSSVPTQ
TPQALAATDAVSLSTSPTAPLSNAKLPEEGLEQYLEKVEKEVLINALNQTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTE
DEA

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=428654 G8D99_RS14415 WP_166327060.1 3155943..3157394(+) (pilR) [Acinetobacter lanii strain 185]
ATGGCAAAACAGCAACCATTGGTCTTATTGGTCGATGATGAGCCTGATTTATGCATGCTGATGCAAATGACGCTTTCGCG
TATGGGCATTAAAACGCATATGGCACACCATCTCAAACAAGCGCAGCATTTTCTTGGGGAATATCACTACGACGCCTGTA
TCACCGATTTCAACTTGCCCGATGGCAATGGCTTGGAACTGGTCAAATACGTCACTCAACATTATCCAAAGACCCCGATT
GCGGTACTGACCGCTTATGCCAATATGGAAATTGCCATTGCGGCATTAAAAGCTGGCGCTTTCGATTTTGTCAGCAAGCC
GATTAATCAACAGCATTTGCATCAGTTATTGCAAAAAGCCCTGCATGTACCGGTCGTTGATGAATCCGAAAATCAACTTG
CACTGGATGAACGCCTGTTGATTGGGCAGTCTGAAGCCATTTGTAAACTCAGAGCATCGATTCGAAAAATTGCCCGCTCA
CAAGCCCCTGTCTTTATTACCGGTGAATCTGGCACAGGTAAAGATGTGGTGGCCAATCTGATTCATCAGTTAAGCAATCG
TCAGGAAGGTCCCTTTATCGCCATCAATTGTGGTGCGATTTCTGAAGAGCTCATGGAGCGAGAGTTATTTGGTCATGTCA
AAGGCTGCTTTCCAAGCGCTGATGAAGACAAACTCGGTTTAATTCAGGCAGCAGACGGCGGCAGTTTATTTCTCGATGAA
ATTTCTGAACTGTCGATGCCAATGCAAGCCAAATTGCTGCGTGCAGTGCAAGAAAAGAAAATCCGTCCCCTCGGCAGTGA
CAAAGAAATCGAAGTGGATTTTCGTATCATCAGTGCCAGTCACCAAAACATTGAACTTTTGGTACAACAAGGTAAATTCC
GCCAAGACTTGTTTTTCCGTATTCATGTCATGGATTTATTGATTGCACCTTTGCGCGAACGGCAACAGGATATTCTGATT
TTGGCCGAGCATTTTATAGAAAAGGTTTGTGCTGAATGGCGGATTGAACCCAAACAACTTTCAACACACGCACAGAAATT
TTTATTGTCGCAATATTATGCAGGCAATGTGCGTGAACTGCGCAATATGATTGAACGTGCGATTACCTTAAGTGATGAAC
AATCGATTGAGATTGAACATTTACAATCGCATACGGCACAGCAAAACATCGAATTTAATTTAAGCTCGGTGCCAACTCAA
ACGCCACAAGCTTTGGCAGCAACAGATGCTGTGAGCTTATCGACTTCGCCAACGGCCCCCTTAAGCAATGCCAAATTACC
CGAAGAAGGCCTAGAGCAATATCTAGAAAAAGTCGAAAAAGAAGTACTGATCAATGCATTGAATCAAACCCATTGGAATC
GAACCTTGGCGGCCAAGAAGCTGGGCATGAGCTTTCGTTCGCTACGCTATCGTTTGAAGAAATTTGGCTTGGATACTGAA
GATGAAGCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(435-475)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8S7H2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

67.427

99.793

0.673
  pilR Pseudomonas aeruginosa PAK

45.625

99.379

0.453