Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   G8D99_RS14410 Genome accession   NZ_CP049916
Coordinates   3154345..3155919 (+) Length   524 a.a.
NCBI ID   WP_406741497.1    Uniprot ID   -
Organism   Acinetobacter lanii strain 185     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3149345..3160919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8D99_RS14390 (G8D99_14390) - 3149836..3151140 (+) 1305 WP_166327052.1 homoserine dehydrogenase -
  G8D99_RS14395 (G8D99_14395) thrC 3151197..3152336 (+) 1140 WP_166327054.1 threonine synthase -
  G8D99_RS14400 (G8D99_14400) - 3152407..3153459 (-) 1053 WP_166327056.1 D-alanyl-D-alanine carboxypeptidase family protein -
  G8D99_RS14405 (G8D99_14405) - 3153681..3154316 (+) 636 WP_166327058.1 response regulator -
  G8D99_RS14410 (G8D99_14410) pilS 3154345..3155919 (+) 1575 WP_406741497.1 sensor histidine kinase Regulator
  G8D99_RS14415 (G8D99_14415) pilR 3155943..3157394 (+) 1452 WP_166327060.1 sigma-54 dependent transcriptional regulator Regulator
  G8D99_RS14420 (G8D99_14420) - 3157450..3158631 (-) 1182 WP_166327061.1 S41 family peptidase -
  G8D99_RS14425 (G8D99_14425) gpmI 3158709..3160256 (-) 1548 WP_166327063.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 59327.84 Da        Isoelectric Point: 6.1226

>NTDB_id=428653 G8D99_RS14410 WP_406741497.1 3154345..3155919(+) (pilS) [Acinetobacter lanii strain 185]
MPMTPKVSIPHYLTIYRLGTLYANYRLIIALSLTLIFFITIENQGLQYEYPNLYFYALMFYVGSSLAQLLLLKYFQHAIS
AQIVGLFAVDLVFLSSLTFALGGPNISIGLLFVISVFASNFLLSKHQALFMTLVAVICVVYQQFVGSLFNHTDLNNIGNS
VFLAFLFFVVYGLGQFSIQRFQLLESLTTYQSNELFKFQNINRYILEQIEVGYLVLDENCKIIVSNPAACTLLGISPLYA
HEQFHLATFQPDLFHILKRSLLADGERFQFESPQSTYVVDVRVQNLIVPQQALTLLILEDAQKLNQKVQQLKLAALGQLS
ASIAHEIRNPLAAIVQANELNQDSDQAQRELLGQMIAKQAKRIDTIIQDTLAMAKNKKTQTIRIHLLSFIQDLIQNDLSD
VAQQIQFEIPASFHLCFDESQLRQVLINLIRNAIRHNAKDAEFILIQAQRQNDIIQIDVIDFGQGIDQADIAQLFKPFFS
TEINGTGLGLYLSQSMCEANQAKLSYIQQKQQGACFRMECAFLD

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=428653 G8D99_RS14410 WP_406741497.1 3154345..3155919(+) (pilS) [Acinetobacter lanii strain 185]
ATGCCAATGACGCCTAAGGTTTCGATCCCGCACTATTTGACGATCTATCGCTTAGGCACATTGTATGCAAATTATCGTTT
AATCATTGCGCTGAGCTTGACCCTGATTTTCTTTATCACCATTGAAAATCAAGGCCTGCAATATGAATACCCGAATCTCT
ATTTTTATGCCTTGATGTTCTATGTCGGCTCAAGCTTGGCACAACTGTTACTGCTGAAATATTTTCAACATGCGATTAGT
GCTCAGATCGTTGGGCTATTTGCGGTGGATCTGGTTTTCTTAAGCAGTCTGACCTTTGCGCTGGGTGGACCGAATATTTC
GATTGGTCTGTTGTTTGTCATATCGGTATTTGCTTCCAATTTTTTGCTGAGCAAACATCAAGCACTATTTATGACCTTGG
TGGCAGTGATTTGCGTGGTCTACCAGCAGTTTGTTGGTAGCTTGTTTAACCATACCGATCTGAACAATATTGGCAACAGT
GTCTTCCTCGCCTTTTTGTTTTTTGTGGTCTATGGGCTAGGACAGTTTTCCATTCAGCGCTTTCAATTGTTGGAATCCTT
GACCACCTATCAATCCAATGAATTATTTAAATTCCAAAATATTAATCGTTATATTTTAGAACAGATTGAAGTGGGTTATT
TGGTCTTGGATGAAAACTGCAAAATCATTGTCAGTAATCCCGCCGCTTGCACCCTACTCGGCATTTCCCCCTTATACGCG
CATGAGCAATTTCATCTGGCGACCTTTCAGCCGGACCTGTTCCATATTTTAAAACGCTCTTTGCTTGCCGATGGTGAACG
CTTTCAATTTGAATCACCACAGTCGACTTATGTAGTCGATGTTCGGGTACAAAACTTAATTGTGCCGCAGCAAGCCCTCA
CGCTCTTGATTTTAGAAGATGCCCAAAAACTCAATCAAAAAGTGCAACAACTAAAATTAGCTGCGCTGGGTCAGCTTTCT
GCCAGTATTGCACATGAAATTCGTAATCCCTTGGCGGCGATTGTACAGGCCAACGAGTTAAATCAAGACAGTGATCAAGC
GCAGCGTGAGTTACTGGGACAAATGATTGCCAAACAAGCCAAACGTATCGACACGATTATTCAAGATACCTTGGCTATGG
CAAAGAATAAAAAAACCCAAACCATTCGCATTCACCTGCTGAGTTTTATTCAAGATTTAATCCAAAACGATTTGTCCGAT
GTGGCTCAGCAGATTCAGTTTGAGATCCCAGCATCCTTTCATCTGTGCTTTGATGAATCTCAACTCCGACAAGTACTGAT
CAATTTGATCCGCAATGCGATTCGGCACAATGCTAAAGATGCTGAATTTATTTTGATTCAAGCACAACGACAAAATGATA
TAATTCAAATTGATGTCATCGACTTTGGGCAAGGCATTGATCAAGCGGATATTGCGCAATTGTTCAAACCTTTCTTTAGT
ACGGAAATTAATGGCACCGGTTTAGGCTTGTACTTATCACAAAGTATGTGTGAAGCGAATCAAGCCAAACTGTCTTATAT
ACAGCAAAAACAACAAGGCGCTTGCTTCAGAATGGAGTGCGCATTTTTAGACTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(315-376)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

58.708

97.519

0.573