Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   G7083_RS10585 Genome accession   NZ_CP049913
Coordinates   2210542..2212737 (+) Length   731 a.a.
NCBI ID   WP_240911938.1    Uniprot ID   -
Organism   Vibrio sp. HDW18     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2205542..2217737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7083_RS10560 (G7083_10560) - 2205898..2206470 (-) 573 WP_166014733.1 PilZ domain-containing protein -
  G7083_RS10565 (G7083_10565) lolC 2206646..2207854 (+) 1209 WP_166014734.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  G7083_RS10570 (G7083_10570) lolD 2207847..2208533 (+) 687 WP_166014735.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  G7083_RS10575 (G7083_10575) lolE 2208537..2209778 (+) 1242 WP_166014736.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  G7083_RS10580 (G7083_10580) - 2209928..2210485 (-) 558 WP_166014737.1 DUF2062 domain-containing protein -
  G7083_RS10585 (G7083_10585) comEC 2210542..2212737 (+) 2196 WP_240911938.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  G7083_RS10590 (G7083_10590) msbA 2212768..2214516 (+) 1749 WP_166014739.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  G7083_RS10595 (G7083_10595) lpxK 2214519..2215526 (+) 1008 WP_166014740.1 tetraacyldisaccharide 4'-kinase -
  G7083_RS10600 (G7083_10600) - 2215507..2215686 (+) 180 WP_166014741.1 Trm112 family protein -
  G7083_RS10605 (G7083_10605) kdsB 2215686..2216444 (+) 759 WP_166014742.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 731 a.a.        Molecular weight: 83332.53 Da        Isoelectric Point: 8.9916

>NTDB_id=428619 G7083_RS10585 WP_240911938.1 2210542..2212737(+) (comEC) [Vibrio sp. HDW18]
MLSAPYWPWMPTWGWAWFCLMICGLCIYYRICRQWLGLGLAILTIVLHGNLIRDQSNLLYQAGPDISIKGRVDSFFTQTR
YAYEGLILIQQVNGQRLHRWHQPRVRLTAPLPLQPNDQFEFSVTLKPVIGRRNQVGFDLEAHSMAQLVLARASVKPNTSY
QIIQRGDVRSAWLTQLTALTDTSRFQGLILALTFGERKAIEESEWQALRNSGLIHLVAISGLHIGIAFSLGYVLGVGLMR
WHVKLIWSPFILGGLLALLYAWLAGFTLPTQRALIMCLLNVALVVLALPLSAYQRILLTLAVVLFWSPFASLSNSFWMSF
LAVAVVLYQLASQNQRQAKWLALLWAQICLVCLMAPVTAYFFGGLSITAVLYNLLFIPWFSLVIVPVLFLGLLLMVALPS
WASGYWPWVDWTFVPLEWALQFAEVGWLVVPKHVQGIVIGIVAVSLLYRIISRQACAFILIMIGLWWWFPCIKPLWRIDV
LDVGHGLAIMIEQNQRAIIYDTGSSWPTGSYAHSVIEPLLQQRGIQQLDGLILSHLDNDHAGDWQGLASRWQPRWIRSSQ
HGVQFEPCVRGVSWQWQSLEFNVLWPPQRVSRAYNPHSCVIRVSDTQSQHSVLLSGDVTALGEWLLARDGVVLQSDVMLV
PHHGSKTSSTVEFIAQVQPQLAIASLAKDNRWNLPHPQVVARYQQQQVQWLDTGQMGQISLFFYPDQLDWLAQRQRYWEP
WYRQMLRKGVE

Nucleotide


Download         Length: 2196 bp        

>NTDB_id=428619 G7083_RS10585 WP_240911938.1 2210542..2212737(+) (comEC) [Vibrio sp. HDW18]
ATGCTCTCTGCACCATATTGGCCATGGATGCCAACGTGGGGCTGGGCGTGGTTTTGCCTCATGATATGTGGCCTGTGCAT
CTATTACCGAATTTGCCGTCAATGGCTTGGTTTAGGATTGGCCATCCTGACCATAGTGCTACATGGCAATCTTATACGAG
ATCAATCCAACCTGCTCTATCAAGCAGGCCCGGATATTAGCATAAAAGGCCGAGTTGACAGCTTTTTTACACAAACACGT
TATGCCTATGAGGGGTTGATCTTAATTCAGCAGGTCAATGGTCAAAGATTGCACCGATGGCATCAGCCGCGCGTGCGTTT
AACCGCGCCGTTACCGTTACAGCCCAATGACCAATTCGAATTTTCCGTAACCCTGAAACCGGTGATTGGACGACGTAATC
AAGTCGGTTTTGATTTAGAAGCGCATTCGATGGCGCAATTGGTCTTAGCTCGCGCCAGTGTTAAACCCAATACCAGCTAC
CAAATTATCCAGCGGGGAGATGTCAGGTCTGCTTGGCTAACCCAATTGACCGCGTTGACCGATACTAGCCGCTTCCAGGG
CTTGATCTTAGCGCTGACCTTTGGCGAGCGTAAAGCGATCGAGGAATCCGAGTGGCAAGCACTGCGCAACAGCGGTTTGA
TTCATTTAGTGGCCATTTCTGGTTTACATATTGGTATCGCATTCAGCTTAGGCTATGTGCTGGGGGTGGGTTTAATGCGT
TGGCATGTCAAGCTGATCTGGTCGCCTTTTATCCTCGGTGGCTTATTAGCACTGCTGTATGCTTGGTTGGCCGGATTCAC
GCTACCCACTCAGCGTGCGCTGATCATGTGTCTGCTCAACGTGGCGTTGGTGGTATTGGCTTTGCCACTGTCAGCGTATC
AGCGTATTTTACTCACCCTTGCGGTGGTGCTGTTTTGGTCGCCGTTCGCTTCGCTCTCCAATAGCTTTTGGATGTCATTT
CTCGCGGTTGCAGTGGTGCTTTATCAGCTCGCCAGCCAAAACCAACGTCAAGCCAAGTGGCTGGCGTTATTGTGGGCGCA
AATCTGTTTGGTTTGTTTAATGGCACCAGTCACGGCGTATTTTTTTGGTGGATTGAGCATCACGGCTGTGTTGTACAATT
TGTTGTTTATCCCGTGGTTTTCATTGGTGATTGTACCGGTGCTATTCTTGGGCCTGCTACTGATGGTGGCGCTTCCGAGT
TGGGCATCTGGCTACTGGCCATGGGTGGATTGGACTTTTGTGCCACTGGAGTGGGCGCTGCAATTTGCGGAAGTCGGTTG
GTTGGTGGTACCCAAGCACGTACAAGGTATCGTGATCGGAATTGTGGCGGTGAGTTTGTTGTATCGAATCATCAGTCGCC
AAGCGTGCGCGTTCATATTGATCATGATTGGACTATGGTGGTGGTTTCCCTGCATCAAGCCGCTTTGGCGAATCGATGTG
TTGGATGTTGGGCATGGCTTAGCGATCATGATTGAGCAAAATCAACGGGCGATTATCTACGATACTGGCAGCAGTTGGCC
GACTGGAAGCTACGCTCACAGCGTGATTGAGCCGCTGTTACAGCAGCGTGGGATTCAGCAATTAGATGGGCTGATTTTAA
GTCATCTGGATAATGATCATGCGGGAGATTGGCAGGGATTGGCTAGCCGCTGGCAGCCGCGTTGGATCCGTAGTAGTCAA
CACGGCGTGCAATTTGAACCTTGTGTTCGTGGTGTGAGTTGGCAGTGGCAGTCACTTGAATTTAATGTGTTATGGCCGCC
GCAACGGGTGAGCCGAGCTTATAACCCGCACTCCTGCGTGATCCGCGTCAGCGATACACAATCCCAGCATTCGGTGTTGT
TATCCGGTGATGTCACCGCGTTGGGTGAGTGGTTACTCGCCCGAGATGGCGTTGTATTACAAAGTGATGTGATGTTAGTG
CCGCATCATGGCAGTAAAACCTCATCGACCGTCGAGTTTATAGCCCAAGTGCAACCCCAGTTGGCGATCGCTTCTCTGGC
CAAAGATAACCGCTGGAACTTGCCTCATCCTCAGGTGGTTGCACGTTATCAGCAACAACAAGTGCAGTGGCTAGATACCG
GACAAATGGGGCAGATTTCGCTATTTTTCTATCCGGATCAGCTTGATTGGTTGGCTCAGCGGCAGCGCTACTGGGAGCCT
TGGTATAGGCAGATGCTACGTAAAGGGGTAGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(8-156)

Competence protein (Competence)

(192-448)

Metallo-beta-lactamase superfamily (Lactamase_B)

(483-662)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

76.744

100

0.767
  comEC Vibrio parahaemolyticus RIMD 2210633

41.813

100

0.423
  comEC Vibrio campbellii strain DS40M4

41.248

100

0.416