Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   G7083_RS07645 Genome accession   NZ_CP049913
Coordinates   1573013..1573645 (-) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio sp. HDW18     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1568013..1578645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7083_RS07625 (G7083_07625) trpS 1568119..1569135 (+) 1017 WP_166014243.1 tryptophan--tRNA ligase -
  G7083_RS07630 (G7083_07630) rimO 1569236..1570648 (-) 1413 WP_166014244.1 30S ribosomal protein S12 methylthiotransferase RimO -
  G7083_RS07635 (G7083_07635) - 1570900..1571493 (+) 594 WP_166014245.1 aminodeoxychorismate/anthranilate synthase component II -
  G7083_RS07640 (G7083_07640) - 1571714..1572928 (+) 1215 WP_166014246.1 aspartate aminotransferase family protein -
  G7083_RS07645 (G7083_07645) crp 1573013..1573645 (-) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  G7083_RS07650 (G7083_07650) - 1573888..1574757 (-) 870 WP_166014247.1 phosphoribulokinase -
  G7083_RS07655 (G7083_07655) - 1574852..1575061 (-) 210 WP_166014248.1 YheU family protein -
  G7083_RS07660 (G7083_07660) - 1575202..1577118 (-) 1917 WP_166014249.1 ABC transporter ATP-binding protein -
  G7083_RS07665 (G7083_07665) slyD 1577355..1577957 (+) 603 WP_166014250.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=428609 G7083_RS07645 WP_000242749.1 1573013..1573645(-) (crp) [Vibrio sp. HDW18]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=428609 G7083_RS07645 WP_000242749.1 1573013..1573645(-) (crp) [Vibrio sp. HDW18]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACACTGATCCACGCGGGTGAGAAAGCGGAAACGCTGTATTACATCGTCAAAGGTTCTGTCGCGGTACTGATTAAAG
ATGAAGAAGGTAAAGAGATGATCCTCTCTTACCTAAACCAAGGTGATTTCATCGGTGAACTGGGCCTCTTTGAAGAAGGC
CAAGAGCGTACCGCTTGGGTTCGAGCTAAAACACCTTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAATTGAT
CCAGGTTAACCCTGATATTTTGATGCGCCTTTCAGGTCAAATGGCTCGCCGTCTGCAAGTCACTAGCCAAAAAGTGGGTG
ACCTGGCGTTCTTAGACGTCACCGGTCGGATTGCCCAAACTCTGCTCAACCTAGCACGTCAACCTGATGCTATGACCCAC
CCTGATGGCATGCAGATCAAAATCACCCGTCAAGAGATTGGTCAAATTGTTGGCTGTTCACGTGAAACCGTTGGCCGCAT
CCTCAAGATGCTGGAAGAGCAAAATCTGATCTCTGCTCACGGTAAAACTATCGTGGTGTACGGTACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467