Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   G7083_RS07590 Genome accession   NZ_CP049913
Coordinates   1560395..1562107 (+) Length   570 a.a.
NCBI ID   WP_166014236.1    Uniprot ID   A0A6G8D3W9
Organism   Vibrio sp. HDW18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1555395..1567107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7083_RS07570 (G7083_07570) pilM 1557688..1558704 (+) 1017 WP_166014232.1 type IV pilus assembly protein PilM Machinery gene
  G7083_RS07575 (G7083_07575) pilN 1558694..1559278 (+) 585 WP_166014233.1 PilN domain-containing protein Machinery gene
  G7083_RS07580 (G7083_07580) pilO 1559271..1559861 (+) 591 WP_166014234.1 type 4a pilus biogenesis protein PilO Machinery gene
  G7083_RS07585 (G7083_07585) pilP 1559851..1560369 (+) 519 WP_166014235.1 pilus assembly protein PilP Machinery gene
  G7083_RS07590 (G7083_07590) pilQ 1560395..1562107 (+) 1713 WP_166014236.1 type IV pilus secretin PilQ family protein Machinery gene
  G7083_RS07595 (G7083_07595) aroK 1562294..1562818 (+) 525 WP_166014237.1 shikimate kinase AroK -
  G7083_RS07600 (G7083_07600) aroB 1562849..1563934 (+) 1086 WP_166014238.1 3-dehydroquinate synthase -
  G7083_RS07605 (G7083_07605) - 1563990..1565456 (+) 1467 WP_166014239.1 AAA family ATPase -
  G7083_RS07610 (G7083_07610) - 1565526..1566359 (+) 834 WP_166014240.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 570 a.a.        Molecular weight: 62205.39 Da        Isoelectric Point: 4.6774

>NTDB_id=428608 G7083_RS07590 WP_166014236.1 1560395..1562107(+) (pilQ) [Vibrio sp. HDW18]
MKNGLKTYVAQAWLTLWIGLAVCTSSVAYAVDSVSANRLENIDFRVNKAQAAVLIVELASASVVVDVQKIPQGLSIDLLK
TDVADDKLYLLDVKDFATPVQSIEVFRKQPTTELIVSIEGEFKHDYSLKGKYLEVVISKLKVDEKPKSKSILEKEGKLIS
INFQDIPVRNVLQLIADYNSFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILIAPKEELDLREKQAL
EKARLTEELGDLKSQIIKINFAKASDIAAMIGGEGNVNMLSDRGSISIDERTNSLLIRELPDNIAVISEIIESLDIPVKQ
VQIEARIVTVKEGNIDELGVRWGVMSTNGSHSVGGSIESNLWQQGLLGDDDFPLDNFLNVNLGASANAPSIAFQVAKLGS
DTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGASTVSFKKAVLSLKVTPQITPDNRLVLDLS
VTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNTVDKVPLLGDLPVLGALFRRTYEQMGKSELL
IFVTPKVVIQ

Nucleotide


Download         Length: 1713 bp        

>NTDB_id=428608 G7083_RS07590 WP_166014236.1 1560395..1562107(+) (pilQ) [Vibrio sp. HDW18]
ATGAAAAATGGATTGAAAACTTATGTCGCCCAGGCTTGGTTGACCTTATGGATTGGTTTGGCGGTTTGCACTTCTTCCGT
CGCGTATGCTGTTGATTCTGTTTCGGCTAATCGATTGGAAAATATTGATTTTCGAGTCAATAAAGCCCAGGCCGCCGTGT
TAATTGTCGAATTGGCTTCCGCTTCGGTAGTGGTGGATGTGCAAAAGATCCCGCAAGGGTTAAGCATTGATCTGCTGAAA
ACCGATGTTGCTGATGACAAGCTTTATCTGCTTGATGTAAAAGATTTTGCCACTCCGGTGCAGAGCATTGAAGTGTTTAG
AAAGCAGCCGACCACGGAGTTGATTGTGAGCATTGAGGGTGAGTTTAAGCATGATTACTCCTTAAAAGGCAAATACCTTG
AAGTGGTGATCAGTAAACTCAAAGTGGATGAAAAGCCAAAATCGAAAAGTATCTTGGAAAAAGAGGGCAAGCTGATCTCA
ATTAACTTCCAAGATATTCCGGTGCGCAATGTCTTACAGCTGATTGCTGACTATAACAGCTTCAATTTAGTGGTCTCGGA
TTCAGTGGTTGGCAACCTCACTTTACGCTTAGATGGGGTACCTTGGCAGCAGGTGTTAGATATTATTTTGCAAGTCAAAG
GATTGGATAAGCGGGTCGATGGCAACGTGATTTTGATTGCACCTAAAGAAGAGCTGGATTTACGTGAGAAACAAGCTTTG
GAAAAGGCGCGTTTGACCGAAGAGCTTGGTGATTTAAAATCACAAATCATCAAGATTAACTTTGCCAAAGCGTCGGATAT
CGCCGCGATGATCGGCGGTGAGGGCAATGTTAATATGCTGTCGGATCGCGGTTCAATCAGCATTGATGAGCGGACTAACT
CGTTGCTGATCCGTGAGTTGCCGGACAATATCGCGGTGATCAGTGAGATCATTGAATCACTAGATATCCCGGTTAAACAA
GTGCAAATTGAAGCGCGGATCGTGACCGTCAAGGAAGGCAATATTGATGAGCTTGGGGTGCGTTGGGGAGTGATGTCGAC
CAATGGTAGCCATTCCGTTGGTGGTTCGATTGAAAGCAATCTCTGGCAACAAGGTCTGCTCGGTGATGATGACTTTCCGC
TCGATAATTTCTTAAATGTTAACTTAGGCGCTTCAGCCAACGCACCTTCGATTGCTTTCCAGGTGGCCAAATTAGGTTCA
GATACGTTGCTCGATTTGGAACTTTCGGCACTGCAAAATGAGTCAAAAGCAGAGATCATCTCTAGCCCACGACTGATCAC
CACCAATAAACAGCCAGCCTATATTGAACAAGGTACCGAGATCCCGTACCTCGAATCTTCCTCCAGTGGCGCTTCAACCG
TATCATTTAAAAAAGCGGTATTGAGTTTAAAAGTGACTCCGCAAATTACCCCAGACAATCGCTTGGTGCTCGATTTGAGC
GTGACTCAAGATCGACGTGGTGAAACGGTCAAAACCGGAACCGGAGAAGCGGTTTCAATTGATACCCAGCGGATCGGCAC
TCAGGTATTGGTCAATAATGGCGAAACGGTGGTGCTGGGCGGCATTTTCCAACACAGTATTAATAATACGGTGGATAAAG
TGCCATTGCTCGGCGATCTGCCCGTGTTAGGCGCTCTGTTTCGCCGCACTTACGAGCAAATGGGTAAAAGTGAGCTACTG
ATTTTTGTCACGCCGAAAGTCGTCATTCAATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(255-320)

Bacterial type II and III secretion system protein (Secretin)

(410-568)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3W9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

90.368

100

0.905
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

90.368

100

0.905
  pilQ Vibrio campbellii strain DS40M4

77.091

96.491

0.744
  pilQ Legionella pneumophila strain ERS1305867

42.435

95.088

0.404
  pilQ Legionella pneumophila strain Lp02

42.435

95.088

0.404
  comQ Acinetobacter baylyi ADP1

39.643

98.246

0.389
  pilQ Acinetobacter baumannii D1279779

37.311

100

0.389
  pilQ Acinetobacter baumannii strain A118

37.311

100

0.389
  pilQ Pseudomonas aeruginosa PAK

39.029

97.544

0.381