Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   G7083_RS07585 Genome accession   NZ_CP049913
Coordinates   1559851..1560369 (+) Length   172 a.a.
NCBI ID   WP_166014235.1    Uniprot ID   -
Organism   Vibrio sp. HDW18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1554851..1565369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7083_RS07565 (G7083_07565) - 1555059..1557536 (-) 2478 WP_166014231.1 penicillin-binding protein 1A -
  G7083_RS07570 (G7083_07570) pilM 1557688..1558704 (+) 1017 WP_166014232.1 type IV pilus assembly protein PilM Machinery gene
  G7083_RS07575 (G7083_07575) pilN 1558694..1559278 (+) 585 WP_166014233.1 PilN domain-containing protein Machinery gene
  G7083_RS07580 (G7083_07580) pilO 1559271..1559861 (+) 591 WP_166014234.1 type 4a pilus biogenesis protein PilO Machinery gene
  G7083_RS07585 (G7083_07585) pilP 1559851..1560369 (+) 519 WP_166014235.1 pilus assembly protein PilP Machinery gene
  G7083_RS07590 (G7083_07590) pilQ 1560395..1562107 (+) 1713 WP_166014236.1 type IV pilus secretin PilQ family protein Machinery gene
  G7083_RS07595 (G7083_07595) aroK 1562294..1562818 (+) 525 WP_166014237.1 shikimate kinase AroK -
  G7083_RS07600 (G7083_07600) aroB 1562849..1563934 (+) 1086 WP_166014238.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19228.29 Da        Isoelectric Point: 10.0112

>NTDB_id=428607 G7083_RS07585 WP_166014235.1 1559851..1560369(+) (pilP) [Vibrio sp. HDW18]
MKNNSLWPLLVSLLMLVGCKANQDNLASYVAQIEREARQEVTKLKPILEFSAVEYQQHKGREPFMLPKEALVNNQPVAQT
DCWQPAPRTKNGPLERYPLTQLRLKGVMSSGGSISALIQTPNGNVVKAKAGQYVGNNNGKIMRVDERYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=428607 G7083_RS07585 WP_166014235.1 1559851..1560369(+) (pilP) [Vibrio sp. HDW18]
ATGAAAAATAATTCGCTGTGGCCACTGTTAGTCAGCTTGTTGATGTTGGTTGGTTGCAAAGCCAATCAAGACAATTTAGC
CAGTTATGTTGCCCAAATTGAGCGTGAAGCTCGCCAAGAAGTGACTAAGCTCAAGCCGATTTTGGAGTTTTCCGCCGTTG
AATATCAACAGCATAAAGGACGTGAGCCATTTATGCTGCCCAAAGAAGCGCTGGTAAACAATCAACCAGTCGCGCAAACC
GATTGTTGGCAACCTGCGCCGCGTACCAAAAATGGCCCCCTTGAGCGTTATCCTCTCACTCAGTTACGTCTTAAGGGTGT
GATGAGCAGTGGAGGATCGATTTCAGCCTTGATCCAGACCCCGAATGGGAACGTGGTCAAAGCCAAAGCGGGGCAATATG
TTGGAAATAATAATGGCAAGATTATGCGGGTCGATGAGCGCTACTTGTTAATTAATGAAACCTTGCCGGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

81.977

100

0.82
  pilP Vibrio campbellii strain DS40M4

54.335

100

0.547