Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G7081_RS02180 Genome accession   NZ_CP049886
Coordinates   434417..434938 (-) Length   173 a.a.
NCBI ID   WP_166007030.1    Uniprot ID   A0A6G8ALQ2
Organism   Vagococcus coleopterorum strain HDW17A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 429069..457821 434417..434938 within 0


Gene organization within MGE regions


Location: 429069..457821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7081_RS02155 (G7081_02155) - 429069..430697 (+) 1629 WP_166007019.1 ABC-F family ATP-binding cassette domain-containing protein -
  G7081_RS02160 (G7081_02160) - 430735..432027 (-) 1293 WP_166007022.1 adenylosuccinate synthase -
  G7081_RS02165 (G7081_02165) dnaB 432151..433515 (-) 1365 WP_166007024.1 replicative DNA helicase -
  G7081_RS02170 (G7081_02170) rplI 433546..433998 (-) 453 WP_166007026.1 50S ribosomal protein L9 -
  G7081_RS02175 (G7081_02175) rpsR 434150..434395 (-) 246 WP_166007028.1 30S ribosomal protein S18 -
  G7081_RS02180 (G7081_02180) ssb 434417..434938 (-) 522 WP_166007030.1 single-stranded DNA-binding protein Machinery gene
  G7081_RS02185 (G7081_02185) rpsF 434981..435280 (-) 300 WP_166007032.1 30S ribosomal protein S6 -
  G7081_RS02190 (G7081_02190) gyrA 435411..437906 (-) 2496 WP_166007034.1 DNA gyrase subunit A -
  G7081_RS02195 (G7081_02195) gyrB 437926..439878 (-) 1953 WP_166007036.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  G7081_RS02200 (G7081_02200) recF 439878..441002 (-) 1125 WP_166007038.1 DNA replication/repair protein RecF -
  G7081_RS02205 (G7081_02205) yaaA 440989..441249 (-) 261 WP_166007040.1 S4 domain-containing protein YaaA -
  G7081_RS02210 (G7081_02210) dnaN 441456..442586 (-) 1131 WP_166007042.1 DNA polymerase III subunit beta -
  G7081_RS02215 (G7081_02215) dnaA 442755..444104 (-) 1350 WP_166007044.1 chromosomal replication initiator protein DnaA -
  G7081_RS02220 (G7081_02220) rpmH 444587..444721 (+) 135 WP_166007046.1 50S ribosomal protein L34 -
  G7081_RS02225 (G7081_02225) rnpA 444845..445189 (+) 345 WP_166007048.1 ribonuclease P protein component -
  G7081_RS02230 (G7081_02230) - 445203..446030 (+) 828 WP_166007050.1 YidC/Oxa1 family membrane protein insertase -
  G7081_RS02235 (G7081_02235) jag 446071..446772 (+) 702 WP_166007052.1 RNA-binding cell elongation regulator Jag/EloR -
  G7081_RS02240 (G7081_02240) - 446961..448115 (+) 1155 WP_166007054.1 NAD(P)-dependent malic enzyme -
  G7081_RS02245 (G7081_02245) mnmE 448324..449712 (+) 1389 WP_166008367.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  G7081_RS02250 (G7081_02250) mnmG 449723..451621 (+) 1899 WP_166007056.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  G7081_RS02255 (G7081_02255) rsmG 451632..452351 (+) 720 WP_166007058.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  G7081_RS02260 (G7081_02260) - 452471..453238 (+) 768 WP_166007060.1 ParA family protein -
  G7081_RS02265 (G7081_02265) - 453228..454115 (+) 888 WP_166008368.1 ParB/RepB/Spo0J family partition protein -
  G7081_RS02270 (G7081_02270) - 454137..454322 (+) 186 WP_166007062.1 DUF951 domain-containing protein -
  G7081_RS02275 (G7081_02275) ychF 454364..455464 (+) 1101 WP_166007064.1 redox-regulated ATPase YchF -
  G7081_RS02280 (G7081_02280) - 455504..456199 (+) 696 WP_238786654.1 DUF1129 domain-containing protein -
  G7081_RS02285 (G7081_02285) guaB 456337..457821 (+) 1485 WP_166007068.1 IMP dehydrogenase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19117.79 Da        Isoelectric Point: 4.5567

>NTDB_id=428348 G7081_RS02180 WP_166007030.1 434417..434938(-) (ssb) [Vagococcus coleopterorum strain HDW17A]
MINNVVLVGRLTKDPDLRYTPSGAAVARFSLAVNRSFKNQNGDYDADFINCVIWRQSAEALANFTRKGSLIGVTGRIQTG
SYEKDGQRVYTTEVVAENFQMLESKNANQQRTQGTPSDTGSNQTQGYQQQNNQGFSQNPSTSSNQNDMPQFTREADPFGS
ASQIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=428348 G7081_RS02180 WP_166007030.1 434417..434938(-) (ssb) [Vagococcus coleopterorum strain HDW17A]
ATGATTAACAATGTTGTACTTGTCGGTCGATTAACAAAAGATCCTGACTTAAGATACACACCAAGTGGTGCAGCGGTTGC
GAGATTCAGTTTAGCTGTCAATCGTAGTTTTAAAAACCAAAATGGTGATTATGATGCTGATTTTATTAACTGTGTTATTT
GGAGACAATCTGCTGAGGCTTTAGCGAATTTCACTAGAAAAGGTTCGTTAATTGGTGTTACAGGTCGTATTCAAACAGGC
AGTTATGAAAAAGATGGTCAAAGAGTGTATACAACAGAAGTTGTAGCTGAAAACTTCCAAATGTTAGAATCAAAAAATGC
TAATCAACAAAGAACCCAAGGGACTCCTTCAGATACTGGTTCAAACCAAACTCAAGGATATCAACAACAAAACAATCAAG
GGTTTTCTCAAAACCCATCGACATCATCCAACCAAAATGATATGCCACAATTTACACGTGAAGCTGATCCATTTGGATCG
GCATCTCAAATTGACATATCTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8ALQ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.091

100

0.601
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.143

100

0.538
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.272

0.364