NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	G7045_RS01810	Genome accession	NZ_CP049885
Coordinates	411459..412328 (-)	Length	289 a.a.
NCBI ID	WP_166156490.1	Uniprot ID	A0A6G8ADG4
Organism	Acidovorax sp. HDW3
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 406459..417328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G7045_RS01780 (G7045_01780)	argJ	407190..408419 (+)	1230	WP_166156475.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
G7045_RS01785 (G7045_01785)	-	408476..409348 (+)	873	WP_166156478.1	ATP-binding protein	-
G7045_RS01790 (G7045_01790)	-	409341..409790 (+)	450	WP_166156481.1	NUDIX domain-containing protein	-
G7045_RS01795 (G7045_01795)	-	409841..410056 (-)	216	WP_166156484.1	DNA gyrase inhibitor YacG	-
G7045_RS01800 (G7045_01800)	zapD	410053..410808 (-)	756	WP_166160315.1	cell division protein ZapD	-
G7045_RS01805 (G7045_01805)	coaE	410844..411443 (-)	600	WP_166156487.1	dephospho-CoA kinase	-
G7045_RS01810 (G7045_01810)	pilD	411459..412328 (-)	870	WP_166156490.1	A24 family peptidase	Machinery gene
G7045_RS01815 (G7045_01815)	pilC	412328..413545 (-)	1218	WP_166156493.1	type II secretion system F family protein	Machinery gene
G7045_RS01820 (G7045_01820)	pilB	413581..415320 (-)	1740	WP_166156496.1	type IV-A pilus assembly ATPase PilB	Machinery gene
G7045_RS01825 (G7045_01825)	-	415738..416094 (+)	357	WP_166156499.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

Download Length: 289 a.a. Molecular weight: 30881.61 Da Isoelectric Point: 7.2556

                                >NTDB_id=428319 G7045_RS01810 WP_166156490.1 411459..412328(-) (pilD) [Acidovorax sp. HDW3]

MLLDPWLASTLAGIFGLLIGSFLNVVIHRLPKILEQQWAADYAHYAAEQGAAPAAATAPAISLSHPRSACPHCGHAIAWY

ENIPVLSYLFLGGRCAGCKARISLRYPLVELVTGALFAFCAWRWGITATGAAWCLFCALIVAMAGIDWDTTLLPDDLTLP

LLWAGLLASALQWIEVPLFAAVMGAAAGYLSLWLVYWGFKLATGKEGMGYGDFKLFAALGVWFGWQALVPIILLSSVIGA

IVGIAMKFSSGLREGGYIPFGPFLAGAGLTALIFGPQTMMQRFLALLGL

Nucleotide

Download Length: 870 bp

                                >NTDB_id=428319 G7045_RS01810 WP_166156490.1 411459..412328(-) (pilD) [Acidovorax sp. HDW3]

ATGTTGTTGGATCCGTGGCTGGCCAGTACCCTGGCCGGCATTTTTGGCCTGCTCATCGGCAGTTTCCTCAACGTCGTCAT

CCACCGCCTCCCCAAAATCCTGGAGCAGCAATGGGCGGCGGATTACGCCCATTACGCTGCCGAGCAAGGCGCGGCCCCCG

CAGCAGCCACGGCGCCCGCCATCAGCCTGTCGCACCCACGCTCGGCCTGCCCGCATTGCGGCCATGCCATTGCCTGGTAT

GAAAACATTCCCGTTCTGAGCTACCTTTTCCTGGGCGGGCGCTGTGCCGGCTGCAAGGCCCGCATCAGCCTGCGCTACCC

CCTGGTCGAGCTCGTCACGGGCGCGCTGTTTGCGTTTTGCGCCTGGCGCTGGGGAATTACCGCCACCGGCGCCGCCTGGT

GCCTGTTTTGCGCCCTCATCGTCGCCATGGCAGGCATCGACTGGGACACCACTTTGCTGCCCGACGACCTGACGCTGCCC

CTGCTCTGGGCTGGCCTGCTGGCCTCGGCCCTGCAGTGGATCGAGGTACCGCTGTTTGCCGCCGTCATGGGTGCCGCCGC

AGGCTACCTGTCGCTGTGGCTGGTGTACTGGGGCTTCAAGCTCGCCACCGGCAAGGAGGGTATGGGGTACGGCGACTTCA

AACTCTTTGCAGCGCTCGGCGTCTGGTTTGGCTGGCAGGCGCTGGTGCCCATCATCTTGCTGTCCTCGGTCATTGGCGCC

ATCGTCGGCATCGCCATGAAATTCTCCAGCGGGCTGCGCGAGGGTGGCTACATCCCGTTTGGCCCTTTCCTCGCCGGTGC

CGGCCTGACCGCACTGATCTTTGGCCCCCAAACCATGATGCAGCGGTTCCTGGCCCTGCTCGGACTCTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(14-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A6G8ADG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	50	98.27	0.491
pilD	Vibrio campbellii strain DS40M4	49.301	98.962	0.488
pilD	Neisseria gonorrhoeae MS11	45.038	90.657	0.408
pilD	Acinetobacter baumannii D1279779	42.007	93.08	0.391
pilD	Acinetobacter nosocomialis M2	41.636	93.08	0.388

Detailed information NTG0428319