Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   G7059_RS10465 Genome accession   NZ_CP049859
Coordinates   435254..436000 (+) Length   248 a.a.
NCBI ID   WP_240920554.1    Uniprot ID   -
Organism   Erysipelothrix sp. HDW6A     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 430254..441000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7059_RS02315 (G7059_02315) - 430656..432542 (+) 1887 WP_166080486.1 DUF2207 domain-containing protein -
  G7059_RS02320 (G7059_02320) - 432632..434326 (+) 1695 WP_166080487.1 ABC transporter ATP-binding protein -
  G7059_RS10460 - 434316..435097 (+) 782 Protein_450 ABC transporter ATP-binding protein -
  G7059_RS10465 rcrQ 435254..436000 (+) 747 WP_240920554.1 ABC transporter ATP-binding protein Regulator
  G7059_RS02330 (G7059_02330) cdaA 436109..437437 (+) 1329 WP_166080488.1 diadenylate cyclase CdaA -
  G7059_RS02335 (G7059_02335) - 437418..438815 (+) 1398 WP_166080489.1 YbbR-like domain-containing protein -
  G7059_RS02340 (G7059_02340) glmM 438827..440146 (+) 1320 WP_166080490.1 phosphoglucosamine mutase -
  G7059_RS02345 (G7059_02345) - 440159..440815 (+) 657 WP_166080491.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 27842.89 Da        Isoelectric Point: 4.7570

>NTDB_id=428205 G7059_RS10465 WP_240920554.1 435254..436000(+) (rcrQ) [Erysipelothrix sp. HDW6A]
MDLEVELQGQSISFEHVNFGYNPKVPIIQDLNLNIEPLSKVAIVGPTGAGKSTMINLLMRFYDTNQGLIEIDGHDVSHMS
RQSARSVMGIVLQDPWLFEGTIRDNIAYGKADASLEEIMHAAKQAGCHETIISLDKGYDTIVELDSNNLSIGQRQMITIA
RALLVNAPMIILDEATSSLDIITEQTIQNVFTEIMKNRTSFFIAHRLSTVVDSDIILVMREGRLVEQGNHEELMKKKGFY
HELYMSQF

Nucleotide


Download         Length: 747 bp        

>NTDB_id=428205 G7059_RS10465 WP_240920554.1 435254..436000(+) (rcrQ) [Erysipelothrix sp. HDW6A]
ATGGATCTGGAAGTTGAATTACAGGGTCAGTCAATATCCTTTGAACATGTAAATTTCGGATACAATCCTAAAGTACCTAT
TATTCAAGACTTAAACCTTAATATTGAACCCTTATCCAAGGTTGCGATTGTTGGACCTACAGGTGCAGGGAAATCAACCA
TGATTAACCTCTTAATGAGATTTTATGATACTAATCAGGGATTAATTGAAATTGATGGTCATGATGTCTCTCATATGAGC
CGTCAATCGGCTCGTTCAGTTATGGGAATTGTACTCCAGGATCCTTGGCTATTTGAAGGAACGATACGCGACAACATTGC
TTATGGAAAGGCAGATGCAAGTTTGGAAGAAATTATGCATGCAGCCAAACAAGCAGGATGTCATGAAACAATCATATCTC
TAGATAAAGGATATGATACAATAGTTGAGCTTGATTCCAATAATTTATCAATTGGTCAACGTCAGATGATCACAATTGCT
CGTGCTCTACTTGTAAATGCACCAATGATAATTTTAGATGAAGCAACAAGTAGTTTGGATATTATCACAGAGCAAACTAT
TCAAAATGTATTCACAGAAATTATGAAGAATCGTACCAGTTTCTTTATTGCCCACCGTTTAAGTACCGTGGTAGATTCAG
ACATTATTCTTGTAATGAGAGAAGGACGATTAGTTGAACAAGGAAACCATGAAGAACTCATGAAGAAAAAAGGCTTTTAT
CATGAACTATATATGAGTCAATTTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.261

95.968

0.492
  comA/nlmT Streptococcus mutans UA159

40.598

94.355

0.383
  comA Streptococcus mitis NCTC 12261

37.759

97.177

0.367
  comA Streptococcus pneumoniae Rx1

37.344

97.177

0.363
  comA Streptococcus pneumoniae D39

37.344

97.177

0.363
  comA Streptococcus pneumoniae R6

37.344

97.177

0.363