Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   G7059_RS00755 Genome accession   NZ_CP049859
Coordinates   130546..130995 (-) Length   149 a.a.
NCBI ID   WP_166080173.1    Uniprot ID   A0A6G7WWH1
Organism   Erysipelothrix sp. HDW6A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 125546..135995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7059_RS00730 (G7059_00730) dnaB 125867..127225 (-) 1359 WP_166080168.1 replicative DNA helicase -
  G7059_RS00735 (G7059_00735) rplI 127236..127682 (-) 447 WP_166080169.1 50S ribosomal protein L9 -
  G7059_RS00740 (G7059_00740) - 127679..129628 (-) 1950 WP_166080170.1 DHH family phosphoesterase -
  G7059_RS00745 (G7059_00745) - 129682..130236 (-) 555 WP_166080171.1 DUF2232 domain-containing protein -
  G7059_RS00750 (G7059_00750) rpsR 130293..130526 (-) 234 WP_166080172.1 30S ribosomal protein S18 -
  G7059_RS00755 (G7059_00755) ssbA 130546..130995 (-) 450 WP_166080173.1 single-stranded DNA-binding protein Machinery gene
  G7059_RS00760 (G7059_00760) rpsF 131009..131302 (-) 294 WP_166080174.1 30S ribosomal protein S6 -
  G7059_RS00765 (G7059_00765) - 131441..132085 (-) 645 WP_240920507.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  G7059_RS00770 (G7059_00770) - 132176..133066 (-) 891 WP_166080175.1 ROK family protein -
  G7059_RS00775 (G7059_00775) - 133084..133386 (-) 303 WP_166080176.1 PTS sugar transporter subunit IIB -
  G7059_RS00780 (G7059_00780) - 133485..133925 (-) 441 WP_166080177.1 hypothetical protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16757.50 Da        Isoelectric Point: 4.4437

>NTDB_id=428194 G7059_RS00755 WP_166080173.1 130546..130995(-) (ssbA) [Erysipelothrix sp. HDW6A]
MINRVVLVGRLTRDPELRKTQTGKSVLSFAVAVNRRFSKEDQADFINCVAWNQTADFIANYLTKGALVSVEGSIQSRSYE
DATGKRVYVQEVVAESVNSLESRTQRQEREQQTQPYQSSGNTGYQPDPEPSFSMDDEPVLDITSDDLPF

Nucleotide


Download         Length: 450 bp        

>NTDB_id=428194 G7059_RS00755 WP_166080173.1 130546..130995(-) (ssbA) [Erysipelothrix sp. HDW6A]
ATGATTAACCGCGTTGTATTAGTGGGTCGTTTGACTCGAGACCCAGAACTTCGTAAAACACAAACAGGAAAATCGGTACT
TTCATTTGCCGTTGCAGTTAACAGAAGATTTTCAAAAGAAGATCAAGCTGATTTCATTAACTGTGTAGCGTGGAATCAAA
CTGCTGATTTTATTGCGAACTACCTTACAAAAGGTGCGCTCGTTAGTGTCGAGGGTTCAATTCAATCGAGATCGTATGAA
GATGCTACTGGTAAACGTGTTTATGTTCAAGAAGTGGTTGCAGAATCTGTAAACTCACTTGAATCAAGAACACAACGTCA
AGAGCGTGAACAACAAACACAACCGTATCAATCATCTGGAAACACAGGATACCAACCTGATCCAGAACCATCATTTTCAA
TGGATGATGAGCCGGTTCTTGACATTACAAGTGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7WWH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

42.373

100

0.503
  ssb Latilactobacillus sakei subsp. sakei 23K

43.529

100

0.497
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.673

75.839

0.369