Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   IF704_RS02305 Genome accession   NZ_CP062380
Coordinates   407711..408313 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain NAS_AN_076     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 402711..413313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF704_RS02270 (IF704_02245) mreC 402726..403568 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  IF704_RS02275 (IF704_02250) mreD 403568..404098 (+) 531 WP_031927662.1 rod shape-determining protein MreD -
  IF704_RS02280 (IF704_02255) rplU 404391..404699 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  IF704_RS02285 (IF704_02260) - 404705..405025 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  IF704_RS02290 (IF704_02265) rpmA 405037..405321 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  IF704_RS02295 (IF704_02270) obgE 405937..407229 (+) 1293 WP_240022168.1 GTPase ObgE -
  IF704_RS02300 (IF704_02275) - 407242..407697 (+) 456 WP_000368902.1 ACT domain-containing protein -
  IF704_RS02305 (IF704_02280) ruvA 407711..408313 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  IF704_RS02310 (IF704_02285) ruvB 408345..409349 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  IF704_RS02315 (IF704_02290) queA 409351..410376 (+) 1026 WP_001019170.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  IF704_RS02320 (IF704_02295) tgt 410399..411538 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  IF704_RS02325 (IF704_02300) yajC 411557..411817 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=428083 IF704_RS02305 WP_000271547.1 407711..408313(+) (ruvA) [Staphylococcus aureus strain NAS_AN_076]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=428083 IF704_RS02305 WP_000271547.1 407711..408313(+) (ruvA) [Staphylococcus aureus strain NAS_AN_076]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTTCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425