Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   G8765_RS26540 Genome accession   NZ_CP049828
Coordinates   5820514..5821578 (-) Length   354 a.a.
NCBI ID   WP_176385593.1    Uniprot ID   -
Organism   Janthinobacterium lividum strain EIF2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5815514..5826578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8765_RS26530 (G8765_26535) - 5816570..5819533 (-) 2964 WP_176385591.1 ribonucleoside-diphosphate reductase subunit alpha -
  G8765_RS26535 (G8765_26540) ampD 5819925..5820536 (-) 612 WP_176376501.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  G8765_RS26540 (G8765_26545) pilR 5820514..5821578 (-) 1065 WP_176385593.1 sigma-54 dependent transcriptional regulator Regulator
  G8765_RS26545 (G8765_26550) - 5821690..5821950 (-) 261 WP_034780264.1 PP0621 family protein -
  G8765_RS26550 (G8765_26555) ccsA 5821947..5822750 (-) 804 WP_034780265.1 cytochrome c biogenesis protein CcsA -
  G8765_RS26555 (G8765_26560) - 5822980..5823969 (-) 990 WP_115057580.1 ABC transporter substrate-binding protein -
  G8765_RS26560 (G8765_26565) - 5824122..5826116 (-) 1995 WP_176385595.1 MacB family efflux pump subunit -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38212.53 Da        Isoelectric Point: 9.7036

>NTDB_id=428057 G8765_RS26540 WP_176385593.1 5820514..5821578(-) (pilR) [Janthinobacterium lividum strain EIF2]
MSRPSPSPQTAAGMPPAPQLSGNSLPMQALRAQIGRIARCGAPVAIRGESGTGKELAARAIHAQGARASFPFIAVNCGAI
PEALMEAEFFGCRPGAYTGALHERQGLFQAAHGGSLLLDEVDDLPLAMQVKLLRVLQERRVRKLGGSTDEAVDVRILCAS
QHGLGRGVAAGTFRQDLFYRLNVIELALPPLRERRGDLQVLCEVILARLSPRRAVSLAPPVLAALAAYAFPGNVRELENV
LERALAFADGGVIALEGLALPPAAGSMPSRAPPALPERQLCLPGMAAYGVTPVLPLDMYLRQAERDMIMLALVQARYHRA
RAARQLGLSVRQLRYRMQKLTIQEALFDERMDDR

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=428057 G8765_RS26540 WP_176385593.1 5820514..5821578(-) (pilR) [Janthinobacterium lividum strain EIF2]
ATGTCCCGTCCCAGCCCCAGTCCGCAGACCGCCGCCGGCATGCCGCCGGCGCCGCAACTGAGCGGCAACTCGCTGCCCAT
GCAGGCGCTGCGCGCGCAGATCGGCCGCATCGCCCGCTGTGGCGCGCCGGTGGCCATCCGCGGCGAATCGGGCACGGGCA
AGGAACTGGCGGCGCGCGCCATCCATGCGCAGGGCGCGCGCGCCAGCTTCCCGTTTATCGCCGTCAACTGTGGCGCCATT
CCCGAAGCGCTGATGGAAGCGGAATTCTTCGGCTGCCGCCCGGGCGCCTATACGGGCGCGCTGCACGAACGCCAGGGCTT
GTTCCAGGCAGCCCACGGTGGCAGCCTGCTGCTCGACGAAGTCGACGACCTGCCGCTGGCCATGCAGGTGAAACTGTTGC
GCGTGCTGCAGGAGCGCCGCGTGCGCAAGCTGGGCGGCAGTACTGACGAGGCCGTCGACGTGCGCATCCTGTGCGCCAGC
CAGCATGGCCTGGGGCGCGGCGTGGCGGCCGGGACGTTTCGCCAGGACCTCTTTTACCGCCTGAATGTGATCGAGCTGGC
ACTGCCGCCGCTGCGCGAACGGCGCGGCGATCTGCAGGTATTATGTGAGGTGATCCTCGCGCGCCTGTCGCCGCGCCGGG
CCGTGAGCCTGGCGCCGCCCGTGCTGGCGGCCCTGGCCGCGTATGCGTTTCCCGGCAATGTGCGCGAACTGGAAAACGTG
CTGGAGCGGGCGCTGGCCTTTGCCGACGGCGGCGTGATCGCGCTCGAGGGGCTGGCCTTGCCGCCGGCGGCGGGCAGCAT
GCCGTCGCGGGCGCCGCCGGCCTTGCCGGAGCGGCAACTGTGCCTGCCCGGCATGGCGGCGTATGGCGTGACCCCCGTCT
TGCCGCTGGACATGTATTTGCGCCAGGCCGAGCGCGACATGATCATGCTGGCGCTGGTGCAGGCGCGCTACCACCGCGCG
CGGGCGGCGCGCCAATTGGGCCTGAGCGTGCGCCAGTTGCGTTACCGCATGCAGAAATTGACGATACAGGAAGCCCTATT
TGATGAGCGCATGGACGATAGATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(21-186)

Bacterial regulatory protein, Fis family (HTH_8)

(300-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

51.662

93.503

0.483
  pilR Acinetobacter baumannii strain A118

40.58

97.458

0.395
  luxO Vibrio cholerae strain A1552

39.938

91.243

0.364