Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   G8E09_RS15885 Genome accession   NZ_CP049806
Coordinates   3349650..3350054 (-) Length   134 a.a.
NCBI ID   WP_002117268.1    Uniprot ID   A0A009NDU9
Organism   Acinetobacter pittii strain A1254     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3344650..3355054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E09_RS15855 (G8E09_15845) - 3344734..3345003 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  G8E09_RS15860 (G8E09_15850) rapZ 3345000..3345851 (-) 852 WP_002117179.1 RNase adapter RapZ -
  G8E09_RS15865 (G8E09_15855) panC 3345875..3346723 (-) 849 WP_002117191.1 pantoate--beta-alanine ligase -
  G8E09_RS15870 (G8E09_15860) panB 3346727..3347536 (-) 810 WP_032057515.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  G8E09_RS15875 (G8E09_15865) folK 3347582..3348064 (-) 483 WP_032057517.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  G8E09_RS15880 (G8E09_15870) pcnB 3348061..3349524 (-) 1464 WP_032057519.1 polynucleotide adenylyltransferase PcnB -
  G8E09_RS15885 (G8E09_15875) comEA 3349650..3350054 (-) 405 WP_002117268.1 ComEA family DNA-binding protein Machinery gene
  G8E09_RS15890 (G8E09_15880) mazG 3350023..3350829 (-) 807 WP_167564105.1 nucleoside triphosphate pyrophosphohydrolase -
  G8E09_RS15895 (G8E09_15885) - 3350942..3351715 (+) 774 WP_032005288.1 SDR family oxidoreductase -
  G8E09_RS15900 (G8E09_15890) relA 3351762..3354068 (-) 2307 WP_002117181.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15424.68 Da        Isoelectric Point: 10.4871

>NTDB_id=427993 G8E09_RS15885 WP_002117268.1 3349650..3350054(-) (comEA) [Acinetobacter pittii strain A1254]
MQLSMNLWKNKHNIFIVLFWSLISSTFVQAQSFDQNFKEWKAKQQMYDQKLSMQQASHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=427993 G8E09_RS15885 WP_002117268.1 3349650..3350054(-) (comEA) [Acinetobacter pittii strain A1254]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAACATTTTCATTGTTTTATTTTGGAGCCTGATTTCTTCAACCTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGATGTATGATCAGAAGTTGAGCATGC
AACAAGCCTCTCATTCTAATAGTCCAAAAAGCTCAGTTATGACTGATTCGTCAGGGCAAATACACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCGATTGTAGAATACCGTCAAAAGAATGGCGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGTATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009NDU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

70.073

100

0.716
  comEA Acinetobacter baumannii D1279779

69.343

100

0.709
  comEA Acinetobacter baylyi ADP1

41.935

92.537

0.388