Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   G8E00_RS10335 Genome accession   NZ_CP049801
Coordinates   2299343..2300053 (+) Length   236 a.a.
NCBI ID   WP_166009204.1    Uniprot ID   A0A6G8RWU4
Organism   Acinetobacter shaoyimingii strain 323-1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2294343..2305053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E00_RS10320 (G8E00_10315) clpB 2294712..2297291 (-) 2580 WP_166224358.1 ATP-dependent chaperone ClpB -
  G8E00_RS10325 (G8E00_10320) - 2297546..2298697 (+) 1152 WP_166224362.1 hypothetical protein -
  G8E00_RS10330 (G8E00_10325) - 2298770..2299192 (-) 423 WP_166009206.1 OsmC family protein -
  G8E00_RS10335 (G8E00_10330) crp 2299343..2300053 (+) 711 WP_166009204.1 cAMP-activated global transcriptional regulator CRP Regulator
  G8E00_RS10340 (G8E00_10335) - 2300242..2301291 (+) 1050 WP_166224365.1 NADP(H)-dependent aldo-keto reductase -
  G8E00_RS10345 (G8E00_10340) - 2301456..2302214 (-) 759 WP_406741385.1 M48 family metallopeptidase -
  G8E00_RS10350 (G8E00_10345) - 2302382..2302693 (-) 312 WP_166010030.1 hypothetical protein -
  G8E00_RS10355 (G8E00_10350) - 2302824..2303618 (-) 795 WP_166009198.1 M48 family metallopeptidase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26381.05 Da        Isoelectric Point: 4.8077

>NTDB_id=427911 G8E00_RS10335 WP_166009204.1 2299343..2300053(+) (crp) [Acinetobacter shaoyimingii strain 323-1]
MTSNLSQLSTDALSPGQLPESVKALLKRAHINRFPKRTPIIDAGTESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFETNPQRTAEVRTRDVCEIAEISYANFHEVSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLDAANAVTDFEENDDE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=427911 G8E00_RS10335 WP_166009204.1 2299343..2300053(+) (crp) [Acinetobacter shaoyimingii strain 323-1]
ATGACTTCTAATTTATCACAACTTAGTACAGACGCTTTGTCACCAGGACAACTGCCTGAATCTGTCAAAGCTTTGCTCAA
ACGTGCCCACATCAATCGCTTTCCAAAACGTACACCAATCATTGATGCAGGCACTGAGTCAAAATCTCTGTATTTAATTT
TAAAAGGGTCCGTTTCAATTATTTTACGTGAAGATGATGATCGTGAAATCGTTGTTGCATATTTAAACCCAGGGGACTTT
TTCGGGGAAATGGGATTGTTTGAAACAAACCCACAACGTACAGCGGAAGTAAGAACTCGCGATGTTTGTGAGATTGCTGA
AATTTCGTATGCCAATTTCCACGAAGTAAGTAAACAATATCCAGACCTTAGCTATGCAGTATTTGCTCAGCTGGTTCGTC
GATTAAAAAATACAACACGTAAAGTAACTGACCTTGCTTTTATTGATGTGTCAGGTCGTATTGCTCGTTGTTTAATTGAC
TTATCTTCACAGCCAGAAGCAATGATCTTACCTAATGGTCGCCAGATCCGCATTACACGCCAAGAAATTGGTCGTATTGT
CGGTTGTTCTCGAGAAATGGTGGGCCGTGTGCTCAAAACACTCGAAGAACAAGGCATGATCGAAACGGATGGTAAAGCTA
TTTTGATTTTCGATGCATCTCTTGATGCAGCAAATGCAGTGACAGATTTTGAAGAGAATGATGACGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8RWU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

90.254

100

0.903
  crp Vibrio cholerae strain A1552

47.317

86.864

0.411
  crp Haemophilus influenzae Rd KW20

47.692

82.627

0.394