Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   IF707_RS01890 Genome accession   NZ_CP062376
Coordinates   352042..352644 (+) Length   200 a.a.
NCBI ID   WP_000271551.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_099     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 347042..357644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF707_RS01855 (IF707_01855) mreC 347253..348095 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  IF707_RS01860 (IF707_01860) mreD 348095..348625 (+) 531 WP_045177814.1 rod shape-determining protein MreD -
  IF707_RS01865 (IF707_01865) rplU 348987..349295 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  IF707_RS01870 (IF707_01870) - 349301..349621 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  IF707_RS01875 (IF707_01875) rpmA 349633..349917 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  IF707_RS01880 (IF707_01880) obgE 350268..351560 (+) 1293 WP_000496100.1 GTPase ObgE -
  IF707_RS01885 (IF707_01885) - 351573..352028 (+) 456 WP_000368902.1 ACT domain-containing protein -
  IF707_RS01890 (IF707_01890) ruvA 352042..352644 (+) 603 WP_000271551.1 Holliday junction branch migration protein RuvA Machinery gene
  IF707_RS01895 (IF707_01895) ruvB 352676..353680 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  IF707_RS01900 (IF707_01900) queA 353682..354707 (+) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  IF707_RS01905 (IF707_01905) tgt 354730..355869 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  IF707_RS01910 (IF707_01910) yajC 355888..356148 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22253.45 Da        Isoelectric Point: 5.7132

>NTDB_id=427904 IF707_RS01890 WP_000271551.1 352042..352644(+) (ruvA) [Staphylococcus aureus strain NAS_AN_099]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKQLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=427904 IF707_RS01890 WP_000271551.1 352042..352644(+) (ruvA) [Staphylococcus aureus strain NAS_AN_099]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCAACTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(156-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.734

99.5

0.465
  ruvA Streptococcus pneumoniae R6

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae D39

46.231

99.5

0.46
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425