Detailed information NTG0427426

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: GTQ41_RS22955
• Genome accession: NZ_CP049737
• Coordinates: 5074261..5075607 (+)
• Length: 448 a.a.
• NCBI ID: WP_047296637.1
• Uniprot ID: -
• Organism: Pseudomonas sp. AN-B15
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5069261..5080607

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTQ41_RS22930 (GTQ41_22955)	pgeF	5069471..5070193 (-)	723	WP_041065342.1	peptidoglycan editing factor PgeF	-
GTQ41_RS22935 (GTQ41_22960)	rluD	5070190..5071152 (-)	963	WP_047296633.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
GTQ41_RS22940 (GTQ41_22965)	-	5071304..5072326 (+)	1023	WP_047296635.1	outer membrane protein assembly factor BamD	-
GTQ41_RS22945 (GTQ41_22970)	-	5072452..5072685 (+)	234	WP_027612810.1	PP0621 family protein	-
GTQ41_RS22950 (GTQ41_22975)	pilS	5072675..5074264 (+)	1590	WP_047296636.1	PAS domain-containing sensor histidine kinase	Regulator
GTQ41_RS22955 (GTQ41_22980)	pilR	5074261..5075607 (+)	1347	WP_047296637.1	sigma-54 dependent transcriptional regulator	Regulator
GTQ41_RS22960 (GTQ41_22985)	thiO	5075698..5076798 (-)	1101	WP_047296639.1	glycine oxidase ThiO	-
GTQ41_RS22965 (GTQ41_22990)	-	5076857..5077258 (-)	402	WP_041065326.1	type IV pilin protein	-
GTQ41_RS22970 (GTQ41_22995)	-	5077274..5080363 (-)	3090	WP_047296641.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49733.17 Da
• Isoelectric Point: 7.4576

>NTDB_id=427426 GTQ41_RS22955 WP_047296637.1 5074261..5075607(+) (pilR) [Pseudomonas sp. AN-B15]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLQRNAFDLCLTDMRLPDGSGLDLVQHIQQRHPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVSTALRMPAVGGAGTSIDRRLLGDSLPMRDLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASKPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRSVGGQQEAVVDVRILCATHKDLEAEVAAGRFRQDLYYRLNVIELRVPSLRERRDDIQVLA
AHMLQRLAAGSGRAAARLHPQALEALKSYRFPGNVRELENVLERAHTLCENQLIEAADLRLSEGNCAVEGGIADLTRIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=427426 GTQ41_RS22955 WP_047296637.1 5074261..5075607(+) (pilR) [Pseudomonas sp. AN-B15]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGTGCTCGCAACCTCGGCGAAGCCCAGGCGCTGTTACAACGCAATGCGTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCAGTGGGCTGGACCTGGTGCAGCACATTCAGCAACGTCATCCACAACTGCCA
GTGGCGATGATCACCGCCTATGGCAGTCTGGAAACCGCGATCAACGCATTGAAGGCTGGCGCCTTCGACTTCCTCACCAA
GCCAGTTGATCTGACGCGCTTGCGTGAACTGGTCAGTACCGCGTTGCGCATGCCGGCGGTGGGCGGCGCCGGCACGTCGA
TAGACCGACGCCTGCTCGGCGACTCGCTGCCCATGCGCGATCTGCGCAAACAGATCGACAAGCTGGCGCGCAGTCAGGCG
CCGGTCTACATCAGCGGAGAATCGGGCAGCGGCAAAGAACTGGTCGCACGGCTGATCCACGAACAGGGACCGCGCGCCAG
CAAGCCGTTTGTGCCGGTCAATTGCGGGGCGATTCCGTCCGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGCAAGGGCA
GCTTTACCGGCGCGGTCGAGGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTTCTCGACGAGGTGGCG
GACCTGCCGCTGGCGATGCAGGTCAAACTGCTGCGGGCGATTCAAGAGAAAGCCGTGCGCAGTGTCGGCGGCCAGCAGGA
AGCGGTGGTCGATGTGCGCATTCTCTGTGCTACCCATAAGGATCTCGAGGCCGAGGTCGCCGCCGGGCGCTTTCGCCAGG
ACCTGTATTACCGCTTGAACGTGATCGAACTGCGTGTGCCGTCCCTGCGCGAACGGCGCGATGACATTCAGGTATTGGCT
GCGCACATGCTCCAGCGTCTGGCGGCAGGCAGCGGACGAGCGGCGGCCCGCCTGCACCCTCAGGCGCTTGAGGCGCTGAA
GAGCTACCGCTTCCCGGGGAATGTGCGAGAGCTGGAAAACGTCCTCGAACGGGCGCACACGCTGTGTGAAAACCAGTTGA
TCGAGGCGGCAGACTTACGGCTCAGCGAAGGTAATTGCGCGGTTGAGGGCGGCATCGCCGATCTTACCCGGATCGACAAC
CTTGAGGATTATCTGGAGAACGTCGAGCGCAAGCTGATCCTGCAGGCGCTGGAGGAAACCCGCTGGAATCGCACGGCAGC
GGCGCAGCGCTTGAGTCTGTCATTTCGCTCGATGCGCTATCGGCTGAAGAAACTCGGTCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.684	98.884	0.788
pilR	Acinetobacter baumannii strain A118	49.02	100	0.502