Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   GTQ41_RS22950 Genome accession   NZ_CP049737
Coordinates   5072675..5074264 (+) Length   529 a.a.
NCBI ID   WP_047296636.1    Uniprot ID   A0A2A2PNF7
Organism   Pseudomonas sp. AN-B15     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5067675..5079264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTQ41_RS22930 (GTQ41_22955) pgeF 5069471..5070193 (-) 723 WP_041065342.1 peptidoglycan editing factor PgeF -
  GTQ41_RS22935 (GTQ41_22960) rluD 5070190..5071152 (-) 963 WP_047296633.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GTQ41_RS22940 (GTQ41_22965) - 5071304..5072326 (+) 1023 WP_047296635.1 outer membrane protein assembly factor BamD -
  GTQ41_RS22945 (GTQ41_22970) - 5072452..5072685 (+) 234 WP_027612810.1 PP0621 family protein -
  GTQ41_RS22950 (GTQ41_22975) pilS 5072675..5074264 (+) 1590 WP_047296636.1 PAS domain-containing sensor histidine kinase Regulator
  GTQ41_RS22955 (GTQ41_22980) pilR 5074261..5075607 (+) 1347 WP_047296637.1 sigma-54 dependent transcriptional regulator Regulator
  GTQ41_RS22960 (GTQ41_22985) thiO 5075698..5076798 (-) 1101 WP_047296639.1 glycine oxidase ThiO -
  GTQ41_RS22965 (GTQ41_22990) - 5076857..5077258 (-) 402 WP_041065326.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58560.25 Da        Isoelectric Point: 6.7389

>NTDB_id=427425 GTQ41_RS22950 WP_047296636.1 5072675..5074264(+) (pilS) [Pseudomonas sp. AN-B15]
MIAEAANADRKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSADDDLLRSGSWLYLVLNILLVVFLENTRRPSQLF
SLALVDVLLLCGLFYAAGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAIGALGIVGSSFLLSLSHPLSANDYLQAGTLG
ALCFAASLLVQGLIRRLEVSENLAEQRASEVTSLEALNALILQRMRTGILVLDEQRRVQLANHSAKTLLAQSHLEGHLIS
DYSPALVERLQLWLSNPTLRPQSLKIPGNGLELQPNFIALDQSPNQQTLVFLEDLAQVAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLGESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEHFVAESREQASER
QSIHLRINSGDFITLMDPDQLTQILDNLLRNGWRHSALLHEQAEVWLALFIDPESQLAVLEVQDNGPGVPLDQQPHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=427425 GTQ41_RS22950 WP_047296636.1 5072675..5074264(+) (pilS) [Pseudomonas sp. AN-B15]
GTGATCGCTGAGGCCGCCAACGCCGACCGTAAACAGGCGCAGCGCCTGCTGCGCCTTTATCATCTTTACCGTTTGAGCGT
CGGCATCACGCTGGTGCTGCTGATCTCCAGCAATATGGACAATCGCCTGCTGACGTCGGCCGACGACGATCTGCTGCGCA
GTGGCAGCTGGTTGTATCTGGTGCTGAACATCCTGCTGGTGGTGTTTCTGGAAAATACCCGGCGGCCCTCGCAGCTGTTC
AGTCTGGCGCTGGTGGATGTGCTGCTGCTGTGCGGTTTGTTCTACGCGGCGGGCGGGGTGGCCAGCGCGATCGGCAACCT
GCTGATTGTCTCGGTGGCGATCAGCAACACCTTGCTGCGCCGGCGCATTGGCCTGCTGATTGCCGCCATCGGCGCACTTG
GCATTGTCGGCTCAAGCTTCCTGCTGAGCCTGAGCCATCCCCTGAGCGCCAATGACTATCTGCAAGCCGGAACCCTGGGC
GCCTTGTGCTTTGCCGCATCGCTGCTGGTCCAGGGTTTGATCCGGCGCCTGGAAGTCAGCGAAAATCTCGCCGAACAGCG
CGCCAGCGAAGTCACCAGCCTTGAAGCCCTCAACGCTCTGATTCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACG
AGCAGCGTCGGGTACAGCTGGCCAACCACAGTGCGAAGACCCTGCTGGCCCAGTCGCATCTTGAAGGCCATTTGATCAGC
GACTATTCGCCAGCATTGGTCGAGCGCCTGCAACTGTGGCTGAGCAACCCGACCCTGCGCCCGCAGAGCCTGAAGATTCC
CGGCAATGGCCTGGAACTGCAACCGAACTTCATCGCCCTCGATCAGAGCCCCAACCAGCAAACCCTGGTGTTCCTCGAAG
ATCTGGCGCAAGTCGCGCAGCAGGCCCAGCAACTCAAGCTCGCCGCGCTCGGGCGCCTGACCGCCGGCATCTCCCATGAA
ATCCGCAATCCACTGGGCGCCATCAGTCACGCCGCGCAGCTGCTGGGCGAGTCCGAGGAACTCGATGGTGCGGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCGCGCCGCCAGC
AGAGCGCCCCTCAGCGCCTGGATCTCAAGCCATGGCTGGAGCACTTCGTTGCCGAGAGCCGCGAACAGGCGAGCGAGCGG
CAGTCGATTCATTTGCGGATCAATTCCGGGGACTTCATCACGTTGATGGATCCGGATCAGCTCACGCAGATTCTCGACAA
TCTGTTACGTAACGGCTGGCGCCACAGCGCCCTGCTGCACGAGCAGGCCGAGGTCTGGCTGGCGCTGTTCATCGACCCCG
AGAGCCAGCTGGCGGTGCTTGAAGTCCAGGACAATGGCCCCGGTGTACCGCTGGATCAACAACCGCATCTGTTCGAACCC
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCGCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A2PNF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.811

100

0.599