Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   GTQ41_RS19455 Genome accession   NZ_CP049737
Coordinates   4310844..4313057 (-) Length   737 a.a.
NCBI ID   WP_047295694.1    Uniprot ID   -
Organism   Pseudomonas sp. AN-B15     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4305844..4318057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTQ41_RS19420 (GTQ41_19440) murB 4306214..4307233 (-) 1020 WP_047295684.1 UDP-N-acetylmuramate dehydrogenase -
  GTQ41_RS19425 (GTQ41_19445) - 4307230..4307694 (-) 465 WP_047295686.1 low molecular weight protein-tyrosine-phosphatase -
  GTQ41_RS19430 (GTQ41_19450) kdsB 4307694..4308458 (-) 765 WP_047295688.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GTQ41_RS19435 (GTQ41_19455) - 4308455..4308640 (-) 186 WP_003174668.1 Trm112 family protein -
  GTQ41_RS19440 (GTQ41_19460) lpxK 4308662..4309672 (-) 1011 WP_047295691.1 tetraacyldisaccharide 4'-kinase -
  GTQ41_RS19445 (GTQ41_19465) - 4309672..4310100 (-) 429 WP_027612340.1 biopolymer transporter ExbD -
  GTQ41_RS19450 (GTQ41_19470) exbB 4310097..4310732 (-) 636 WP_047295693.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GTQ41_RS19455 (GTQ41_19475) comA 4310844..4313057 (-) 2214 WP_047295694.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GTQ41_RS19460 (GTQ41_19480) - 4313194..4313712 (+) 519 WP_047295696.1 DUF2062 domain-containing protein -
  GTQ41_RS19465 (GTQ41_19485) - 4313876..4314655 (-) 780 WP_041069097.1 ABC transporter permease -
  GTQ41_RS19470 (GTQ41_19490) - 4314652..4315584 (-) 933 WP_041069096.1 ABC transporter ATP-binding protein -
  GTQ41_RS19475 (GTQ41_19495) - 4315718..4316341 (-) 624 WP_047295698.1 glutathione S-transferase family protein -
  GTQ41_RS19480 (GTQ41_19500) - 4316385..4317044 (-) 660 WP_047295700.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 81327.72 Da        Isoelectric Point: 10.6192

>NTDB_id=427418 GTQ41_RS19455 WP_047295694.1 4310844..4313057(-) (comA) [Pseudomonas sp. AN-B15]
MRTGMMALAVGLLVPVFLPVLPPVGLMMLLPLVGLMLLPFRSYPLAFLLFGFTWACVSALWALNDRLPAALDGETRWVEG
RVVGLPQTSEGVVRFELADARSRHEKLPSLMRLAWHAGPPLNSGERWRLAVKLKRPSGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLAEASWAWRDSIRQRLLEVDTQGRGGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGMLAAVVYLL
IAGLARYGWWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNALLLFDPL
ASLRPGFWLSFAAVGILIFTFGGRLGAWNWWQTWTRAQWLIALGLCPLLLALNLPISLSGPLANLLAVPWVSLLVLPPAL
LGTLLLPVPYVGAGLLWLAGGLIDWLFRGLSVIAGIWPAWISPSLPWWTLLIGSLGAVLLLLPRGVPLRPLGWPLLLILL
APPRERVAEGLADIWQLDVGQGLAILIRTRHHTLLYDTGPRFGDFDLGQRVVLPALHKLGVERIDLMLLSHADADHAGGA
LAVSRGLKVTRVISGDPPGLPAILRAEACESGRQWQWDGVRFQLWQWSAAHDSNQRSCVLQIEANGERLLLTGDIDTAAE
RALLESPLALPTHWLQAPHHGSRSSSSMALLRALRPHSVLISRGQGNSFGHPHPLVLARYRQQGLRIYDSAQHGAIHLRL
GGFQAPWLMRQQRRFWR

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=427418 GTQ41_RS19455 WP_047295694.1 4310844..4313057(-) (comA) [Pseudomonas sp. AN-B15]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGTACCCGTTTTTTTGCCGGTTTTACCGCCGGTCGGGTTGAT
GATGTTGTTGCCATTGGTGGGACTGATGTTGCTGCCGTTTCGCAGCTATCCGCTGGCGTTTCTGCTGTTCGGTTTCACCT
GGGCGTGCGTCAGTGCACTGTGGGCGTTGAATGATCGCCTGCCGGCAGCGCTTGACGGCGAAACCCGTTGGGTCGAGGGG
CGGGTGGTCGGCTTGCCGCAAACCAGCGAGGGTGTCGTGCGCTTCGAGCTCGCCGATGCCCGCTCGCGACACGAGAAATT
GCCGTCGTTGATGCGTCTGGCGTGGCACGCCGGGCCGCCGCTCAACAGCGGCGAGCGTTGGCGGCTGGCGGTGAAGCTCA
AGCGCCCGAGTGGCCTGCTCAATCCCGATGCGTTCGATTACGAAGCGTGGCTACTGGCGCAACGCATCGGCGCGACCGGC
ACGATCAAAGACGGTCAGCGCCTGGCCGAGGCCAGTTGGGCGTGGCGCGACAGCATTCGCCAGCGCTTGCTTGAAGTGGA
CACGCAGGGCCGGGGCGGTGCATTGGCGGCGCTGGTGCTCGGTGACGGCTCCGGGCTCAGTCGCGAGGATTGGCAGATCC
TGCAGGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGTCAACACATCGGGATGTTGGCGGCGGTCGTGTATCTGCTG
ATCGCCGGGCTGGCGCGCTATGGCTGGTGGCCGCTGCGCTGGCCCTGGCTGCCATGGGCCTGTGGGCTGGCGTTTGCCGC
AGCGCTCGGCTACGGCTTGCTCGCCGGGTTTGATGTGCCGGTGCAACGGGCCTGCGTGATGGTCGGGCTGGTGTTGTTGT
GGCGCCTGCGCTTTCGCCATCTCGGCGCGTGGTGGCCGCTGTTGCTGGCCTTCAATGCGCTGCTGTTATTCGATCCGTTG
GCCAGTTTGCGTCCCGGTTTTTGGCTGTCGTTCGCCGCCGTGGGGATTTTGATTTTCACCTTCGGCGGGCGCCTCGGCGC
GTGGAATTGGTGGCAGACCTGGACCCGGGCGCAATGGCTGATTGCGCTGGGCCTGTGCCCGCTGTTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGCCCTCTGGCGAATCTGCTGGCGGTGCCGTGGGTCAGTCTGCTGGTGCTGCCACCAGCGCTG
CTGGGCACGCTATTGTTGCCGGTGCCTTACGTCGGTGCAGGCTTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TCGCGGCTTGTCGGTGATCGCCGGGATCTGGCCGGCATGGATCTCACCGTCGCTGCCGTGGTGGACCTTGTTGATTGGCA
GTCTCGGGGCCGTATTGTTGCTGTTGCCGCGCGGTGTGCCCTTGCGACCATTGGGCTGGCCGTTGCTGTTGATTTTGCTG
GCGCCGCCTCGCGAGCGGGTGGCCGAGGGACTGGCTGATATCTGGCAACTTGATGTCGGTCAGGGCCTGGCGATCCTGAT
CCGCACGCGTCATCACACATTGCTCTACGACACCGGTCCACGTTTCGGCGATTTCGATCTGGGGCAGCGAGTGGTGCTGC
CGGCGCTGCACAAACTGGGGGTTGAGCGCATCGACCTGATGCTGCTCAGTCATGCCGATGCCGACCATGCCGGTGGTGCG
CTGGCGGTATCACGCGGCTTGAAAGTGACACGGGTGATCAGCGGCGATCCTCCGGGGCTGCCCGCCATCCTGCGGGCCGA
AGCCTGTGAAAGCGGACGTCAATGGCAGTGGGACGGGGTCCGGTTTCAGCTGTGGCAGTGGTCGGCGGCCCATGACAGCA
ATCAGCGCTCCTGCGTGTTGCAGATCGAGGCCAATGGCGAGCGTCTGTTGCTGACCGGCGATATCGACACGGCTGCCGAA
CGGGCTCTGCTGGAGAGTCCGTTGGCGCTACCAACGCACTGGCTGCAAGCGCCGCATCATGGCAGTCGCAGTTCGTCTTC
AATGGCGCTGCTTCGGGCACTGAGGCCGCATTCGGTGCTGATCTCCCGGGGGCAGGGCAATTCGTTCGGGCATCCGCACC
CGCTGGTGCTGGCGCGTTATCGTCAGCAAGGGTTGCGCATCTACGACAGCGCGCAGCACGGCGCCATCCATCTGCGCCTG
GGCGGCTTTCAGGCGCCGTGGCTGATGCGTCAACAGCGGCGTTTCTGGCGTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.56

97.422

0.6
  comA Ralstonia pseudosolanacearum GMI1000

34.941

100

0.364