Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GTQ41_RS19450 Genome accession   NZ_CP049737
Coordinates   4310097..4310732 (-) Length   211 a.a.
NCBI ID   WP_047295693.1    Uniprot ID   -
Organism   Pseudomonas sp. AN-B15     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4305097..4315732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTQ41_RS19415 (GTQ41_19435) - 4305352..4305822 (-) 471 WP_047295682.1 (2Fe-2S)-binding protein -
  GTQ41_RS19420 (GTQ41_19440) murB 4306214..4307233 (-) 1020 WP_047295684.1 UDP-N-acetylmuramate dehydrogenase -
  GTQ41_RS19425 (GTQ41_19445) - 4307230..4307694 (-) 465 WP_047295686.1 low molecular weight protein-tyrosine-phosphatase -
  GTQ41_RS19430 (GTQ41_19450) kdsB 4307694..4308458 (-) 765 WP_047295688.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GTQ41_RS19435 (GTQ41_19455) - 4308455..4308640 (-) 186 WP_003174668.1 Trm112 family protein -
  GTQ41_RS19440 (GTQ41_19460) lpxK 4308662..4309672 (-) 1011 WP_047295691.1 tetraacyldisaccharide 4'-kinase -
  GTQ41_RS19445 (GTQ41_19465) - 4309672..4310100 (-) 429 WP_027612340.1 biopolymer transporter ExbD -
  GTQ41_RS19450 (GTQ41_19470) exbB 4310097..4310732 (-) 636 WP_047295693.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GTQ41_RS19455 (GTQ41_19475) comA 4310844..4313057 (-) 2214 WP_047295694.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GTQ41_RS19460 (GTQ41_19480) - 4313194..4313712 (+) 519 WP_047295696.1 DUF2062 domain-containing protein -
  GTQ41_RS19465 (GTQ41_19485) - 4313876..4314655 (-) 780 WP_041069097.1 ABC transporter permease -
  GTQ41_RS19470 (GTQ41_19490) - 4314652..4315584 (-) 933 WP_041069096.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22870.97 Da        Isoelectric Point: 6.8768

>NTDB_id=427417 GTQ41_RS19450 WP_047295693.1 4310097..4310732(-) (exbB) [Pseudomonas sp. AN-B15]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMATNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=427417 GTQ41_RS19450 WP_047295693.1 4310097..4310732(-) (exbB) [Pseudomonas sp. AN-B15]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATTGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAGCTCAAGGAATTGCGCGCCAACTCGCCGCTGGGTGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCGCGGGTGATTCACGAGCTCGAACGCTACGT
CAACGCGCTGGGCACCATTGCTGCCATGGCACCGTTGCTGGGCCTGCTGGGCACAGTACTGGGCATGATCGATATTTTCA
GCGCTTTCACCGGTTCCGGCATGGCCACCAACGCTTCTGTGTTGGCCGGTGGTATTTCCAAGGCACTGATCACCACCGCA
GCGGGCCTGATGGTCGGTATTCCATCGGTGTTCTTCCACCGTTTCCTGCAGCGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848