Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   IF736_RS01880 Genome accession   NZ_CP062350
Coordinates   348029..348631 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain NAS_AN_250     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 343029..353631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF736_RS01840 (IF736_01830) - 343047..343166 (+) 120 WP_000840602.1 hypothetical protein -
  IF736_RS01845 (IF736_01835) mreC 343365..344207 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  IF736_RS01850 (IF736_01840) mreD 344207..344737 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  IF736_RS01855 (IF736_01845) rplU 344973..345281 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  IF736_RS01860 (IF736_01850) - 345287..345607 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  IF736_RS01865 (IF736_01855) rpmA 345619..345903 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  IF736_RS01870 (IF736_01860) obgE 346255..347547 (+) 1293 WP_000496100.1 GTPase ObgE -
  IF736_RS01875 (IF736_01865) - 347560..348015 (+) 456 WP_000368903.1 ACT domain-containing protein -
  IF736_RS01880 (IF736_01870) ruvA 348029..348631 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  IF736_RS01885 (IF736_01875) ruvB 348663..349667 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  IF736_RS01890 (IF736_01880) queA 349669..350694 (+) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  IF736_RS01895 (IF736_01885) tgt 350717..351856 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  IF736_RS01900 (IF736_01890) yajC 351875..352135 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=426836 IF736_RS01880 WP_000271547.1 348029..348631(+) (ruvA) [Staphylococcus aureus strain NAS_AN_250]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=426836 IF736_RS01880 WP_000271547.1 348029..348631(+) (ruvA) [Staphylococcus aureus strain NAS_AN_250]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425