Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   GYO_RS41220 Genome accession   NC_016047
Coordinates   3833161..3833280 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus spizizenii TU-B-10     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3828161..3838280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS41195 (GYO_4122) - 3828331..3829614 (+) 1284 WP_014115551.1 pitrilysin family protein -
  GYO_RS41200 (GYO_4123) - 3829611..3830312 (+) 702 WP_014115552.1 bacteriocin biosynthesis protein AlbG -
  GYO_RS41205 (GYO_4124) - 3830450..3831805 (-) 1356 WP_014115553.1 YncE family protein -
  GYO_RS41215 (GYO_4126) rapF 3832032..3833177 (+) 1146 WP_014115555.1 response regulator aspartate phosphatase RapF Regulator
  GYO_RS41220 phrF 3833161..3833280 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  GYO_RS41225 - 3833521..3834000 (+) 480 WP_041521094.1 hypothetical protein -
  GYO_RS41230 (GYO_4128) - 3834150..3834938 (+) 789 WP_014115557.1 membrane protein -
  GYO_RS41235 (GYO_4129) - 3834925..3835599 (+) 675 WP_014115558.1 hypothetical protein -
  GYO_RS41240 (GYO_4130) - 3835609..3836406 (+) 798 WP_238528886.1 hypothetical protein -
  GYO_RS41245 (GYO_4131) - 3836409..3837056 (+) 648 WP_014115560.1 ABC transporter ATP-binding protein -
  GYO_RS41250 (GYO_4132) - 3837049..3837609 (+) 561 WP_014115561.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=42623 GYO_RS41220 WP_009968329.1 3833161..3833280(+) (phrF) [Bacillus spizizenii TU-B-10]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=42623 GYO_RS41220 WP_009968329.1 3833161..3833280(+) (phrF) [Bacillus spizizenii TU-B-10]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment