Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   G5S32_RS01270 Genome accession   NZ_CP049331
Coordinates   287525..288157 (-) Length   210 a.a.
NCBI ID   WP_004728582.1    Uniprot ID   A0A7X4LI26
Organism   Vibrio ziniensis strain ZWAL4003     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 282525..293157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S32_RS01250 (G5S32_01250) - 282577..283788 (+) 1212 WP_165310122.1 aspartate aminotransferase family protein -
  G5S32_RS01255 (G5S32_01255) astA 283874..284893 (+) 1020 WP_165310123.1 arginine N-succinyltransferase -
  G5S32_RS01260 (G5S32_01260) astD 284914..286389 (+) 1476 WP_165310124.1 succinylglutamate-semialdehyde dehydrogenase -
  G5S32_RS01265 (G5S32_01265) - 286525..287319 (+) 795 WP_165310125.1 DUF1338 domain-containing protein -
  G5S32_RS01270 (G5S32_01270) crp 287525..288157 (-) 633 WP_004728582.1 cAMP-activated global transcriptional regulator CRP Regulator
  G5S32_RS01275 (G5S32_01275) - 288398..289267 (-) 870 WP_165310126.1 phosphoribulokinase -
  G5S32_RS01280 (G5S32_01280) - 289363..289572 (-) 210 WP_165310127.1 YheU family protein -
  G5S32_RS01285 (G5S32_01285) - 289679..290659 (-) 981 WP_165310128.1 hydrolase -
  G5S32_RS01290 (G5S32_01290) - 290780..291250 (-) 471 WP_165310129.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23593.41 Da        Isoelectric Point: 8.2772

>NTDB_id=426144 G5S32_RS01270 WP_004728582.1 287525..288157(-) (crp) [Vibrio ziniensis strain ZWAL4003]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=426144 G5S32_RS01270 WP_004728582.1 287525..288157(-) (crp) [Vibrio ziniensis strain ZWAL4003]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCTTCAAA
AAGCACGCTAATTCATGCGGGCGAGAAAGCAGAAACTTTGTACTACATTGTTAAAGGTTCTGTTGCGGTACTGATTAAAG
ATGAAGAAGGAAAGGAAATGATCCTTTCTTACCTAAACCAAGGTGATTTCATCGGTGAACTTGGCTTGTTTGAAGAAGGT
CAAGAGCGTACAGCATGGGTTCGTGCTAAGTCTCCATGTGAAGTTGCGGAAATTTCATTTAAGAAATTCCGTCAGCTTAT
CCAAGTAAACCCAGATATTTTGATGCGTCTTTCAGGTCAGATGGCTCGCCGTCTACAAGTAACAAGCCAGAAAGTTGGTG
ACCTTGCGTTCCTAGACGTAACAGGCCGTATTGCTCAGACGCTACTTAACCTAGCGAAACAACCTGATGCAATGACTCAC
CCAGACGGTATGCAGATCAAGATTACTCGTCAAGAGATCGGCCAAATCGTTGGCTGTTCACGTGAGACAGTTGGTCGAAT
TCTGAAGATGCTTGAAGAGCAGAACCTAATTTCAGCTCACGGTAAGACTATCGTTGTCTACGGAACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4LI26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467