Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   G5571_RS01700 Genome accession   NZ_CP049314
Coordinates   368413..368895 (+) Length   160 a.a.
NCBI ID   WP_001046489.1    Uniprot ID   A0A0J0ZLV7
Organism   Acinetobacter baumannii strain Ex003     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 363413..373895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5571_RS01690 (G5571_00334) pilX 363718..364536 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  G5571_RS01695 (G5571_00335) pilY1 364548..368402 (+) 3855 WP_000768943.1 vWA domain-containing protein Machinery gene
  G5571_RS01700 (G5571_00336) pilY2 368413..368895 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  G5571_RS01705 (G5571_00337) pilE 368892..369317 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene
  G5571_RS01710 (G5571_00338) rpsP 369464..369715 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  G5571_RS01715 (G5571_00339) rimM 369735..370283 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  G5571_RS01720 (G5571_00340) trmD 370329..371069 (+) 741 WP_000464595.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  G5571_RS01725 (G5571_00341) rplS 371277..371645 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  G5571_RS01730 (G5571_00342) - 371697..372638 (-) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  G5571_RS01735 (G5571_00343) - 372753..373784 (-) 1032 WP_001189459.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17657.94 Da        Isoelectric Point: 8.4737

>NTDB_id=426005 G5571_RS01700 WP_001046489.1 368413..368895(+) (pilY2) [Acinetobacter baumannii strain Ex003]
MNKYYILRFNQGFTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCETNSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=426005 G5571_RS01700 WP_001046489.1 368413..368895(+) (pilY2) [Acinetobacter baumannii strain Ex003]
ATGAATAAGTACTACATTTTACGGTTCAATCAGGGTTTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAACGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZLV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

96.25

100

0.963
  comE Acinetobacter baylyi ADP1

41.86

100

0.45