Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   G5571_RS01690 Genome accession   NZ_CP049314
Coordinates   363718..364536 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain Ex003     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 358718..369536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5571_RS01655 - 359300..359430 (-) 131 Protein_316 hypothetical protein -
  G5571_RS01660 (G5571_00328) rpoZ 359469..359747 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  G5571_RS01665 (G5571_00329) gmk 359820..360449 (-) 630 WP_000015937.1 guanylate kinase -
  G5571_RS01670 (G5571_00330) ispH 360572..361522 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  G5571_RS01675 (G5571_00331) fimU 361692..362165 (+) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  G5571_RS01680 (G5571_00332) pilV 362159..362719 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  G5571_RS01685 (G5571_00333) pilW 362720..363721 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  G5571_RS01690 (G5571_00334) pilX 363718..364536 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  G5571_RS01695 (G5571_00335) pilY1 364548..368402 (+) 3855 WP_000768943.1 vWA domain-containing protein Machinery gene
  G5571_RS01700 (G5571_00336) pilY2 368413..368895 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  G5571_RS01705 (G5571_00337) pilE 368892..369317 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=426003 G5571_RS01690 WP_000149374.1 363718..364536(+) (pilX) [Acinetobacter baumannii strain Ex003]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=426003 G5571_RS01690 WP_000149374.1 363718..364536(+) (pilX) [Acinetobacter baumannii strain Ex003]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993