Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   G5C61_RS13240 Genome accession   NZ_CP049296
Coordinates   2455991..2456353 (-) Length   120 a.a.
NCBI ID   WP_164796737.1    Uniprot ID   -
Organism   Priestia megaterium strain S188     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2450991..2461353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C61_RS13230 - 2451491..2454121 (+) 2631 WP_164796735.1 DEAD/DEAH box helicase -
  G5C61_RS13235 - 2454420..2455466 (+) 1047 WP_164796736.1 C40 family peptidase -
  G5C61_RS13240 ssbB 2455991..2456353 (-) 363 WP_164796737.1 single-stranded DNA-binding protein Machinery gene
  G5C61_RS13245 - 2456450..2456887 (+) 438 WP_014457773.1 YwpF-like family protein -
  G5C61_RS13250 - 2457409..2457831 (+) 423 WP_025752508.1 helix-turn-helix transcriptional regulator -
  G5C61_RS13255 fabZ 2457860..2458294 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  G5C61_RS13260 - 2458378..2459199 (-) 822 WP_164796738.1 flagellar hook-basal body protein -
  G5C61_RS13265 - 2459223..2460047 (-) 825 WP_164796739.1 flagellar hook-basal body protein -
  G5C61_RS13270 - 2460162..2461163 (-) 1002 WP_013059791.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13482.23 Da        Isoelectric Point: 7.1647

>NTDB_id=425949 G5C61_RS13240 WP_164796737.1 2455991..2456353(-) (ssbB) [Priestia megaterium strain S188]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGFSSFDPNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=425949 G5C61_RS13240 WP_164796737.1 2455991..2456353(-) (ssbB) [Priestia megaterium strain S188]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTCGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTTTTCTTCATTTGATCCAAATCAGCAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

88.333

0.467