Detailed information NTG0425949

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: IF761_RS01955
• Genome accession: NZ_CP062329
• Coordinates: 358155..359159 (+)
• Length: 334 a.a.
• NCBI ID: WP_001005767.1
• Uniprot ID: Q6GG63
• Organism: Staphylococcus aureus strain NAS_OP_026
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 353155..364159

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF761_RS01925 (IF761_01915)	rplU	353939..354247 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
IF761_RS01930 (IF761_01920)	-	354253..354573 (+)	321	WP_020978210.1	ribosomal-processing cysteine protease Prp	-
IF761_RS01935 (IF761_01925)	rpmA	354585..354869 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
IF761_RS01940 (IF761_01930)	obgE	355747..357039 (+)	1293	WP_000496103.1	GTPase ObgE	-
IF761_RS01945 (IF761_01935)	-	357052..357507 (+)	456	WP_000368902.1	ACT domain-containing protein	-
IF761_RS01950 (IF761_01940)	ruvA	357521..358123 (+)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
IF761_RS01955 (IF761_01945)	ruvB	358155..359159 (+)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
IF761_RS01960 (IF761_01950)	queA	359161..360186 (+)	1026	WP_001019178.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
IF761_RS01965 (IF761_01955)	tgt	360209..361348 (+)	1140	WP_001112049.1	tRNA guanosine(34) transglycosylase Tgt	-
IF761_RS01970 (IF761_01960)	yajC	361367..361627 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37718.00 Da
• Isoelectric Point: 5.0865

>NTDB_id=425949 IF761_RS01955 WP_001005767.1 358155..359159(+) (ruvB) [Staphylococcus aureus strain NAS_OP_026]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=425949 IF761_RS01955 WP_001005767.1 358155..359159(+) (ruvB) [Staphylococcus aureus strain NAS_OP_026]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAGCGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: Q6GG63

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515