Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CVT06_RS06755 Genome accession   NZ_CP049274
Coordinates   1331750..1332520 (-) Length   256 a.a.
NCBI ID   WP_107793704.1    Uniprot ID   -
Organism   Campylobacter concisus strain P10CDO-S2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1326750..1337520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT06_RS06725 (CVT06_06725) hemW 1327266..1328312 (+) 1047 WP_107793710.1 radical SAM family heme chaperone HemW -
  CVT06_RS06730 (CVT06_06730) tatB 1328380..1328778 (+) 399 WP_107793709.1 Sec-independent protein translocase protein TatB -
  CVT06_RS06735 (CVT06_06735) tatC 1328778..1329536 (+) 759 WP_107793708.1 twin-arginine translocase subunit TatC -
  CVT06_RS06740 (CVT06_06740) queA 1329529..1330551 (+) 1023 WP_107793707.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CVT06_RS06745 (CVT06_06745) - 1330548..1331348 (+) 801 WP_107793706.1 hypothetical protein -
  CVT06_RS06750 (CVT06_06750) dprB 1331370..1331753 (-) 384 WP_107793705.1 Holliday junction resolvase RuvX Machinery gene
  CVT06_RS06755 (CVT06_06755) dprA 1331750..1332520 (-) 771 WP_107793704.1 DNA-processing protein DprA Machinery gene
  CVT06_RS06760 (CVT06_06760) - 1332517..1333908 (-) 1392 WP_107793703.1 divergent polysaccharide deacetylase family protein -
  CVT06_RS06765 (CVT06_06765) ilvC 1333912..1334934 (-) 1023 WP_054196937.1 ketol-acid reductoisomerase -
  CVT06_RS06770 (CVT06_06770) - 1335077..1335895 (+) 819 WP_021091523.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28086.58 Da        Isoelectric Point: 6.2680

>NTDB_id=425820 CVT06_RS06755 WP_107793704.1 1331750..1332520(-) (dprA) [Campylobacter concisus strain P10CDO-S2]
MRLDFIPEPLNRLKNPPKQLNFIGDTSLLSLPKIAVVGSRKASVYTKECVTALCTALKSANVCVVSGGAIGVDITAHKAA
MPRTIGIFASGLDTIYPSQNKVAIKEIHEKALALSEYDEGEPPLAYRFLERNRIVVGLCEALVVAQADLKSGSMQSARLA
NELKIPVYVLPQRIGESDGTNFLLANKKAELIDDYHKFASLFGKIKEQEKTSDEILEFCKNGVSLDEVLAKFGDIIYEYE
LEGLVEISNLRVKSLL

Nucleotide


Download         Length: 771 bp        

>NTDB_id=425820 CVT06_RS06755 WP_107793704.1 1331750..1332520(-) (dprA) [Campylobacter concisus strain P10CDO-S2]
ATGAGACTTGACTTTATCCCAGAGCCGTTAAATAGACTAAAAAATCCACCAAAACAGCTAAATTTTATCGGAGATACTTC
GCTTTTATCTTTGCCAAAGATCGCAGTTGTTGGCTCAAGAAAGGCAAGTGTTTATACAAAAGAGTGCGTCACAGCACTTT
GTACAGCACTAAAAAGTGCAAACGTCTGTGTGGTAAGTGGCGGAGCTATCGGCGTTGATATCACAGCTCATAAAGCCGCT
ATGCCACGAACGATTGGTATTTTTGCGAGCGGACTTGACACCATCTATCCAAGCCAAAATAAAGTGGCAATAAAAGAAAT
TCATGAAAAAGCCTTGGCTCTTAGTGAGTATGATGAAGGTGAGCCGCCACTTGCTTATAGATTTTTAGAGCGAAACCGTA
TAGTTGTGGGGCTTTGTGAAGCTCTAGTCGTCGCGCAAGCTGATCTTAAAAGTGGCTCTATGCAAAGTGCAAGGCTTGCA
AACGAGCTTAAAATTCCAGTTTATGTACTGCCACAACGCATAGGTGAAAGCGATGGGACAAATTTTTTGCTTGCAAATAA
AAAAGCCGAGCTTATCGATGACTATCATAAATTTGCTTCACTTTTTGGCAAGATTAAAGAGCAAGAAAAAACTAGTGACG
AGATTTTAGAATTTTGTAAAAATGGCGTAAGTCTTGATGAAGTTTTGGCAAAATTTGGCGATATCATCTATGAGTACGAG
CTTGAAGGGCTAGTTGAAATTTCAAATCTAAGAGTAAAGAGCTTGCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.298

91.797

0.535
  dprA Helicobacter pylori 26695

43.825

98.047

0.43