Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CVT06_RS06750 Genome accession   NZ_CP049274
Coordinates   1331370..1331753 (-) Length   127 a.a.
NCBI ID   WP_107793705.1    Uniprot ID   -
Organism   Campylobacter concisus strain P10CDO-S2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1326370..1336753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT06_RS06725 (CVT06_06725) hemW 1327266..1328312 (+) 1047 WP_107793710.1 radical SAM family heme chaperone HemW -
  CVT06_RS06730 (CVT06_06730) tatB 1328380..1328778 (+) 399 WP_107793709.1 Sec-independent protein translocase protein TatB -
  CVT06_RS06735 (CVT06_06735) tatC 1328778..1329536 (+) 759 WP_107793708.1 twin-arginine translocase subunit TatC -
  CVT06_RS06740 (CVT06_06740) queA 1329529..1330551 (+) 1023 WP_107793707.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CVT06_RS06745 (CVT06_06745) - 1330548..1331348 (+) 801 WP_107793706.1 hypothetical protein -
  CVT06_RS06750 (CVT06_06750) dprB 1331370..1331753 (-) 384 WP_107793705.1 Holliday junction resolvase RuvX Machinery gene
  CVT06_RS06755 (CVT06_06755) dprA 1331750..1332520 (-) 771 WP_107793704.1 DNA-processing protein DprA Machinery gene
  CVT06_RS06760 (CVT06_06760) - 1332517..1333908 (-) 1392 WP_107793703.1 divergent polysaccharide deacetylase family protein -
  CVT06_RS06765 (CVT06_06765) ilvC 1333912..1334934 (-) 1023 WP_054196937.1 ketol-acid reductoisomerase -
  CVT06_RS06770 (CVT06_06770) - 1335077..1335895 (+) 819 WP_021091523.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14334.38 Da        Isoelectric Point: 7.0171

>NTDB_id=425819 CVT06_RS06750 WP_107793705.1 1331370..1331753(-) (dprB) [Campylobacter concisus strain P10CDO-S2]
MREKFMAIDVGLKRIGLAFGFGEVVTPLEPVLRKNRNQAARDVSQTVNEYAPDMLVVGVPIGGSSEDEMRRRIEHFVSLL
DVKANIVYQDEAFSSSEASEIYTNTRRDGRLDSISATIILKRYLRIN

Nucleotide


Download         Length: 384 bp        

>NTDB_id=425819 CVT06_RS06750 WP_107793705.1 1331370..1331753(-) (dprB) [Campylobacter concisus strain P10CDO-S2]
ATGAGAGAGAAATTTATGGCTATTGATGTTGGGTTAAAGCGAATAGGGCTTGCCTTTGGTTTTGGCGAGGTCGTGACGCC
GCTTGAGCCAGTGCTTAGAAAAAATAGAAATCAAGCTGCAAGAGATGTGAGCCAAACGGTAAATGAATATGCCCCAGATA
TGCTGGTAGTGGGTGTGCCAATCGGCGGTAGTAGCGAAGATGAGATGAGAAGACGCATCGAGCATTTTGTTTCACTTCTT
GATGTAAAGGCAAATATTGTCTATCAAGATGAGGCCTTTAGCAGCAGTGAAGCTAGTGAAATTTACACCAATACAAGACG
AGATGGTAGGCTAGATAGCATTTCGGCCACTATTATTTTAAAAAGATATCTTAGGATAAATTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(4-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

47.287

100

0.48