Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   IHN45_RS15355 Genome accession   NZ_CP062250
Coordinates   3163187..3163846 (+) Length   219 a.a.
NCBI ID   WP_001221495.1    Uniprot ID   P52076
Organism   Escherichia coli strain AML002_par     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 3158187..3168846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHN45_RS15330 ygiS 3159470..3161077 (-) 1608 WP_001295629.1 ABC transporter substrate-binding protein -
  IHN45_RS15335 mqsA 3161210..3161605 (-) 396 WP_000650107.1 type II toxin-antitoxin system antitoxin MqsA -
  IHN45_RS15340 mqsR 3161607..3161903 (-) 297 WP_000415584.1 type II toxin-antitoxin system toxin MqsR -
  IHN45_RS15345 ygiV 3162108..3162590 (-) 483 WP_000183505.1 GyrI-like domain-containing protein -
  IHN45_RS15350 ygiW 3162643..3163035 (-) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  IHN45_RS15355 ciaR 3163187..3163846 (+) 660 WP_001221495.1 quorum sensing response regulator transcription factor QseB Regulator
  IHN45_RS15360 qseC 3163843..3165192 (+) 1350 WP_000673402.1 quorum sensing histidine kinase QseC -
  IHN45_RS15365 ygiZ 3165238..3165570 (-) 333 WP_000917684.1 DUF2645 family protein -
  IHN45_RS15370 mdaB 3165889..3166470 (+) 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
  IHN45_RS15375 ygiN 3166501..3166815 (+) 315 WP_000958598.1 putative quinol monooxygenase -
  IHN45_RS15380 parE 3166863..3168755 (-) 1893 WP_000195296.1 DNA topoisomerase IV subunit B -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24677.59 Da        Isoelectric Point: 6.9850

>NTDB_id=425282 IHN45_RS15355 WP_001221495.1 3163187..3163846(+) (ciaR) [Escherichia coli strain AML002_par]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLSRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=425282 IHN45_RS15355 WP_001221495.1 3163187..3163846(+) (ciaR) [Escherichia coli strain AML002_par]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52076

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

37.885

100

0.393
  ciaR Streptococcus pneumoniae D39

37.885

100

0.393
  ciaR Streptococcus pneumoniae R6

37.885

100

0.393
  ciaR Streptococcus pneumoniae TIGR4

37.885

100

0.393
  ciaR Streptococcus mutans UA159

35.426

100

0.361