Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RES7_RS07505 Genome accession   NZ_CP049091
Coordinates   1538767..1539633 (-) Length   288 a.a.
NCBI ID   WP_037551650.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain SE3.9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1523659..1570105 1538767..1539633 within 0


Gene organization within MGE regions


Location: 1523659..1570105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RES7_RS07440 (RES7_007435) rseP 1524514..1525800 (-) 1287 WP_161511120.1 RIP metalloprotease RseP -
  RES7_RS07445 (RES7_007440) - 1526011..1526793 (-) 783 WP_037537321.1 phosphatidate cytidylyltransferase -
  RES7_RS07450 (RES7_007445) - 1526797..1527567 (-) 771 WP_037551640.1 isoprenyl transferase -
  RES7_RS07455 (RES7_007450) frr 1527788..1528342 (-) 555 WP_011275941.1 ribosome recycling factor -
  RES7_RS07460 (RES7_007455) pyrH 1528360..1529082 (-) 723 WP_011275942.1 UMP kinase -
  RES7_RS07465 (RES7_007460) tsf 1529219..1530097 (-) 879 WP_011275943.1 translation elongation factor Ts -
  RES7_RS07470 (RES7_007465) rpsB 1530262..1531050 (-) 789 WP_011275944.1 30S ribosomal protein S2 -
  RES7_RS07475 (RES7_007470) codY 1531320..1532093 (-) 774 WP_037551646.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  RES7_RS07480 (RES7_007475) hslU 1532115..1533518 (-) 1404 WP_037537323.1 ATP-dependent protease ATPase subunit HslU -
  RES7_RS07485 (RES7_007480) hslV 1533577..1534122 (-) 546 WP_011275947.1 ATP-dependent protease subunit HslV -
  RES7_RS07490 (RES7_007485) xerC 1534123..1535016 (-) 894 WP_037537325.1 tyrosine recombinase XerC -
  RES7_RS07495 (RES7_007490) trmFO 1535188..1536495 (-) 1308 WP_037537326.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RES7_RS07500 (RES7_007495) topA 1536519..1538588 (-) 2070 WP_037537327.1 type I DNA topoisomerase -
  RES7_RS07505 (RES7_007500) dprA 1538767..1539633 (-) 867 WP_037551650.1 DNA-processing protein DprA Machinery gene
  RES7_RS07510 (RES7_007505) - 1539852..1540800 (-) 949 Protein_1467 peptidoglycan bridge formation glycyltransferase FemA/FemB family protein -
  RES7_RS11885 - 1540831..1541083 (-) 253 Protein_1468 CHAP domain-containing protein -
  RES7_RS07520 (RES7_007515) sucD 1541523..1542428 (-) 906 WP_037551652.1 succinate--CoA ligase subunit alpha -
  RES7_RS07525 (RES7_007520) sucC 1542450..1543616 (-) 1167 WP_053024898.1 ADP-forming succinate--CoA ligase subunit beta -
  RES7_RS07530 (RES7_007525) - 1543728..1544495 (-) 768 WP_161510896.1 ribonuclease HII -
  RES7_RS07535 (RES7_007530) ylqF 1544479..1545363 (-) 885 WP_070442290.1 ribosome biogenesis GTPase YlqF -
  RES7_RS07540 (RES7_007535) - 1545601..1548195 (+) 2595 WP_037551660.1 YfhO family protein -
  RES7_RS07545 (RES7_007540) - 1548197..1550806 (+) 2610 WP_161510897.1 YfhO family protein -
  RES7_RS07550 (RES7_007545) rplS 1550957..1551307 (-) 351 WP_037537864.1 50S ribosomal protein L19 -
  RES7_RS07555 (RES7_007550) trmD 1551412..1552149 (-) 738 WP_037551666.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RES7_RS07560 (RES7_007555) rimM 1552149..1552652 (-) 504 WP_161510898.1 ribosome maturation factor RimM -
  RES7_RS07565 (RES7_007560) rpsP 1552771..1553046 (-) 276 WP_011275962.1 30S ribosomal protein S16 -
  RES7_RS07570 (RES7_007565) ffh 1553561..1554931 (-) 1371 WP_161510899.1 signal recognition particle protein -
  RES7_RS07575 (RES7_007570) - 1554957..1555289 (-) 333 WP_011275964.1 putative DNA-binding protein -
  RES7_RS07580 (RES7_007575) ftsY 1555276..1556499 (-) 1224 WP_053024892.1 signal recognition particle-docking protein FtsY -
  RES7_RS07585 (RES7_007580) smc 1556496..1560065 (-) 3570 WP_053024891.1 chromosome segregation protein SMC -
  RES7_RS07590 (RES7_007585) rnc 1560150..1560887 (-) 738 WP_037551679.1 ribonuclease III -
  RES7_RS07595 (RES7_007590) - 1560973..1561206 (-) 234 WP_001830184.1 acyl carrier protein -
  RES7_RS07600 (RES7_007595) fabG 1561319..1562056 (-) 738 WP_011275968.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  RES7_RS07605 (RES7_007600) fabD 1562046..1562975 (-) 930 WP_053026806.1 ACP S-malonyltransferase -
  RES7_RS07610 (RES7_007605) plsX 1562968..1563954 (-) 987 WP_037551683.1 phosphate acyltransferase PlsX -
  RES7_RS07615 (RES7_007610) fapR 1563956..1564516 (-) 561 WP_037551685.1 transcription factor FapR -
  RES7_RS07620 (RES7_007615) recG 1564652..1566703 (-) 2052 WP_037551688.1 ATP-dependent DNA helicase RecG -
  RES7_RS07625 (RES7_007620) - 1566858..1567655 (-) 798 WP_161510900.1 thermonuclease family protein -
  RES7_RS07630 (RES7_007625) - 1567826..1569129 (-) 1304 Protein_1491 ISL3 family transposase -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 33107.08 Da        Isoelectric Point: 9.2746

>NTDB_id=424719 RES7_RS07505 WP_037551650.1 1538767..1539633(-) (dprA) [Staphylococcus haemolyticus strain SE3.9]
MTNNNILLLKLIWLGYTTQHIHHLLKLNPDFFKFSYTDQIDTIRNWDRMFHNDDFIDKFNNLNEKDILSLLQNHKVSFTT
PFNTNYPRLLKEIYDYPFVLFYQGDPRLLTSSNTLGVVGSRNATEYSAKAMQYLFPKFKQIPLTIISGLAKGADSIAHHF
AIEYQLPTIAVLGFGHMMHYPRETQKLRNIIEEKGLVISEYPPLTSVRRYHFPQRNRLISGLSKGVLITEASVRSGSQIT
IDCALDQNRNIYVLPGSIFNPLTKGNLKRAQEGAMIVTSADDILCDYK

Nucleotide


Download         Length: 867 bp        

>NTDB_id=424719 RES7_RS07505 WP_037551650.1 1538767..1539633(-) (dprA) [Staphylococcus haemolyticus strain SE3.9]
ATGACTAACAACAACATATTACTTTTGAAATTAATTTGGCTAGGTTATACGACCCAACATATTCATCATTTATTAAAATT
AAATCCTGATTTTTTTAAATTCTCTTATACTGATCAAATAGATACAATAAGAAATTGGGACAGAATGTTTCATAATGATG
ATTTTATTGATAAATTTAATAATTTAAATGAAAAAGATATTTTGTCACTTTTGCAGAATCACAAAGTAAGTTTTACAACA
CCGTTTAACACTAATTATCCTCGACTGTTAAAAGAAATTTATGATTATCCGTTTGTCCTATTTTACCAAGGTGACCCCCG
TTTATTAACATCCTCCAATACATTAGGTGTGGTGGGCTCAAGAAATGCAACAGAATACTCAGCTAAAGCCATGCAATACT
TATTTCCTAAATTTAAACAAATTCCACTAACTATTATTTCCGGTTTGGCAAAAGGTGCTGATAGCATAGCACATCATTTT
GCTATAGAGTATCAATTACCTACAATAGCTGTTTTAGGTTTTGGTCATATGATGCATTACCCTAGAGAAACGCAAAAATT
ACGCAACATAATTGAAGAAAAAGGTTTAGTTATTAGTGAATATCCGCCACTCACTAGTGTTAGGCGATATCACTTTCCGC
AGCGCAATCGTTTGATAAGCGGTCTTTCAAAAGGGGTTTTAATAACTGAAGCAAGTGTTAGAAGCGGTAGTCAAATTACA
ATTGATTGCGCATTAGACCAAAATAGAAATATATATGTATTACCAGGTTCAATATTTAATCCACTAACAAAAGGTAATTT
GAAACGAGCTCAAGAAGGTGCGATGATTGTAACCTCAGCTGATGATATCCTATGTGATTATAAATAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

52.281

98.958

0.517
  dprA Staphylococcus aureus N315

52.281

98.958

0.517
  dprA Glaesserella parasuis strain SC1401

36.749

98.264

0.361