Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G5S31_RS07770 Genome accession   NZ_CP049090
Coordinates   1618759..1619223 (+) Length   154 a.a.
NCBI ID   WP_160405122.1    Uniprot ID   -
Organism   Glaesserella parasuis strain aHPS7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1613759..1624223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S31_RS07750 (G5S31_07735) - 1614165..1615619 (-) 1455 WP_062924312.1 aminoacyl-histidine dipeptidase -
  G5S31_RS07755 (G5S31_07740) gpt 1615799..1616278 (+) 480 WP_005714020.1 xanthine phosphoribosyltransferase -
  G5S31_RS07760 (G5S31_07745) gmk 1616516..1617142 (+) 627 WP_071610761.1 guanylate kinase -
  G5S31_RS07765 (G5S31_07750) radA 1617195..1618571 (-) 1377 WP_005711784.1 DNA repair protein RadA -
  G5S31_RS07770 (G5S31_07755) pilA 1618759..1619223 (+) 465 WP_160405122.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  G5S31_RS07775 (G5S31_07760) pilB 1619270..1620655 (+) 1386 WP_160405120.1 GspE/PulE family protein Machinery gene
  G5S31_RS07780 (G5S31_07765) pilC 1620648..1621844 (+) 1197 WP_160405118.1 type II secretion system F family protein Machinery gene
  G5S31_RS07785 (G5S31_07770) - 1621841..1622509 (+) 669 WP_160405116.1 prepilin peptidase -
  G5S31_RS07790 (G5S31_07775) dapE 1622593..1623726 (+) 1134 WP_160405114.1 succinyl-diaminopimelate desuccinylase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16361.96 Da        Isoelectric Point: 9.0759

>NTDB_id=424679 G5S31_RS07770 WP_160405122.1 1618759..1619223(+) (pilA) [Glaesserella parasuis strain aHPS7]
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNVGDKKIAECSSGKN
GVQADKTDVADAKYLKSISVAAGVITVAGKGSIDGYSYTMTPKFANNNITWTTSCQGTDTSLFPANFCGTKATQ

Nucleotide


Download         Length: 465 bp        

>NTDB_id=424679 G5S31_RS07770 WP_160405122.1 1618759..1619223(+) (pilA) [Glaesserella parasuis strain aHPS7]
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTGATGATCGTGATCGCCATCATTGC
TATTTTAGCCACGATTGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCTGCACTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACGTAGGGGATAAAAAAATCGCAGAATGTAGTTCTGGTAAAAAT
GGCGTTCAAGCGGATAAAACCGATGTTGCCGATGCGAAATATCTTAAATCTATTTCCGTCGCTGCAGGTGTAATCACAGT
GGCAGGTAAAGGCAGTATTGATGGTTACAGCTACACAATGACTCCGAAATTTGCCAATAACAACATTACTTGGACAACAA
GCTGTCAAGGGACTGACACCAGTTTGTTCCCTGCGAATTTCTGTGGGACAAAAGCCACACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

92.81

99.351

0.922
  pilA Haemophilus influenzae Rd KW20

55.333

97.403

0.539
  pilA Haemophilus influenzae 86-028NP

55.034

96.753

0.532