Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G5C59_RS08470 Genome accession   NZ_CP049088
Coordinates   1699410..1700051 (-) Length   213 a.a.
NCBI ID   WP_021111957.1    Uniprot ID   A0A836MEW3
Organism   Glaesserella parasuis strain sHPS7     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1694410..1705051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C59_RS08455 (G5C59_08415) - 1695615..1696373 (-) 759 WP_021112874.1 esterase family protein -
  G5C59_RS08460 (G5C59_08420) - 1696508..1697686 (-) 1179 WP_164681738.1 ATP-grasp domain-containing protein -
  G5C59_RS08465 (G5C59_08425) fumC 1697868..1699262 (-) 1395 WP_035523130.1 class II fumarate hydratase -
  G5C59_RS08470 (G5C59_08430) sxy/tfoX 1699410..1700051 (-) 642 WP_021111957.1 TfoX/Sxy family DNA transformation protein Regulator
  G5C59_RS08475 (G5C59_08435) - 1700316..1701004 (-) 689 Protein_1667 ISAs1 family transposase -
  G5C59_RS08485 (G5C59_08445) ffh 1701288..1702670 (-) 1383 WP_010786427.1 signal recognition particle protein -
  G5C59_RS08490 (G5C59_08450) - 1702977..1703954 (+) 978 WP_021112898.1 DUF1852 domain-containing protein -
  G5C59_RS08495 (G5C59_08455) - 1703977..1705011 (+) 1035 WP_021111404.1 methionine synthase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24775.77 Da        Isoelectric Point: 9.7347

>NTDB_id=424632 G5C59_RS08470 WP_021111957.1 1699410..1700051(-) (sxy/tfoX) [Glaesserella parasuis strain sHPS7]
MKYIDVKTQHIRNLLYPIIGETQAKTYFSYYGIMKDGALFALYKNSKFYLHISGNCLHEVLTNPNISQLSDSKYGINSKS
FYLIPTEILYDLKPISHWITNGIQEIINTKHTQYIKKKRCIRTLPNMTIQLERTLKKLGINSIDELIDRGEVDIFVNLLK
MGIDADQAILFRLYGAINRQYIYTISDKTKQDLLNDANHALYEAGLRKRFNVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=424632 G5C59_RS08470 WP_021111957.1 1699410..1700051(-) (sxy/tfoX) [Glaesserella parasuis strain sHPS7]
ATGAAATACATTGATGTAAAAACACAACACATTAGAAATTTGCTTTATCCTATAATTGGAGAAACTCAAGCAAAAACATA
TTTTTCCTACTATGGAATAATGAAAGATGGAGCTCTGTTTGCTCTATATAAAAATAGTAAATTCTATCTTCATATCTCAG
GAAACTGTCTACATGAAGTACTAACTAATCCCAATATATCCCAACTGTCCGACTCTAAATATGGTATCAATTCTAAATCT
TTCTATTTGATTCCAACAGAAATTTTATATGATTTAAAACCCATCTCCCATTGGATAACCAATGGTATTCAAGAGATTAT
AAATACAAAACACACCCAATATATAAAAAAGAAAAGATGTATCCGTACCTTACCTAATATGACTATTCAACTAGAAAGGA
CATTGAAAAAGTTAGGTATCAACTCCATCGATGAACTGATTGATAGAGGTGAAGTGGATATATTCGTTAATCTTCTTAAG
ATGGGTATAGATGCTGATCAAGCTATTTTGTTCCGTCTTTATGGAGCAATTAATCGACAATATATTTATACTATCTCTGA
TAAGACTAAGCAGGATCTACTTAATGATGCAAATCATGCTCTATATGAGGCTGGCTTACGTAAGCGCTTCAATGTTAAAT
AA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(120-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836MEW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Glaesserella parasuis strain SC1401

100

100

1
  sxy/tfoX Actinobacillus suis H91-0380

41.429

98.592

0.408
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

39.234

98.122

0.385