Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   G5C59_RS05055 Genome accession   NZ_CP049088
Coordinates   1042421..1042951 (-) Length   176 a.a.
NCBI ID   WP_021113425.1    Uniprot ID   A0AAX1M6F3
Organism   Glaesserella parasuis strain sHPS7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1037421..1047951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C59_RS05020 (G5C59_04990) trxA 1037579..1037893 (-) 315 WP_015940165.1 thioredoxin -
  G5C59_RS05025 (G5C59_04995) - 1038190..1038819 (-) 630 WP_005712495.1 LysE family transporter -
  G5C59_RS05030 (G5C59_05000) - 1038821..1039291 (-) 471 WP_021118735.1 phosphatidylglycerophosphatase A -
  G5C59_RS05035 (G5C59_05005) thiL 1039294..1040262 (-) 969 WP_021113430.1 thiamine-phosphate kinase -
  G5C59_RS05040 (G5C59_05010) nusB 1040271..1040684 (-) 414 WP_021112072.1 transcription antitermination factor NusB -
  G5C59_RS05045 (G5C59_05015) comE 1040763..1042025 (-) 1263 WP_021113424.1 type IV pilus secretin PilQ Machinery gene
  G5C59_RS05050 (G5C59_05020) comD 1042035..1042421 (-) 387 WP_021112070.1 hypothetical protein Machinery gene
  G5C59_RS05055 (G5C59_05025) comC 1042421..1042951 (-) 531 WP_021113425.1 hypothetical protein Machinery gene
  G5C59_RS05060 (G5C59_05030) comB 1042948..1043469 (-) 522 WP_021113427.1 hypothetical protein Machinery gene
  G5C59_RS05065 (G5C59_05035) comA 1043445..1044122 (-) 678 WP_021113429.1 hypothetical protein Machinery gene
  G5C59_RS05070 (G5C59_05040) - 1044276..1046831 (+) 2556 WP_021119495.1 penicillin-binding protein 1A -
  G5C59_RS05075 (G5C59_05045) aroK 1047061..1047582 (+) 522 WP_015940157.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 20880.41 Da        Isoelectric Point: 9.9672

>NTDB_id=424623 G5C59_RS05055 WP_021113425.1 1042421..1042951(-) (comC) [Glaesserella parasuis strain sHPS7]
MKLSLAKYYLMPQHPLYRGLYYLNQNKIFILSGIFLLIMAFPIGNYLYLNQQIAQQQKQLTEFKQINEHKQQQLKLLQQR
YQLAQDKSELLTQINQQIQKILDKNSVEIDSIQWNMEERKIYLLISQSTQKVLNVIADLNQLTMVKFQEIHLTKKTKQKH
IQLNATLLFQADTGEP

Nucleotide


Download         Length: 531 bp        

>NTDB_id=424623 G5C59_RS05055 WP_021113425.1 1042421..1042951(-) (comC) [Glaesserella parasuis strain sHPS7]
ATGAAATTGTCCTTAGCCAAGTATTATTTAATGCCACAACATCCATTATATCGTGGTTTATATTATTTAAACCAAAATAA
AATATTTATTCTATCGGGAATATTTTTGTTAATTATGGCATTTCCAATAGGGAATTATCTTTATCTTAATCAGCAAATAG
CTCAACAACAAAAACAGCTCACTGAATTTAAACAGATTAACGAACATAAACAGCAACAATTAAAATTATTACAACAACGT
TATCAACTTGCTCAAGATAAAAGTGAATTATTAACCCAAATAAATCAACAAATTCAAAAAATCTTGGATAAAAACAGCGT
AGAAATTGACAGTATTCAATGGAATATGGAAGAAAGAAAAATCTATTTATTAATCAGCCAATCTACGCAAAAGGTACTTA
ATGTGATTGCTGATCTTAATCAATTAACCATGGTTAAATTTCAGGAAATCCATTTAACTAAAAAAACAAAACAGAAACAT
ATTCAACTCAATGCCACTTTACTTTTTCAAGCTGACACAGGAGAACCCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Glaesserella parasuis strain SC1401

99.432

100

0.994