Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   G5C59_RS05060 Genome accession   NZ_CP049088
Coordinates   1042948..1043469 (-) Length   173 a.a.
NCBI ID   WP_021113427.1    Uniprot ID   A0A836MB14
Organism   Glaesserella parasuis strain sHPS7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1037948..1048469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C59_RS05025 (G5C59_04995) - 1038190..1038819 (-) 630 WP_005712495.1 LysE family transporter -
  G5C59_RS05030 (G5C59_05000) - 1038821..1039291 (-) 471 WP_021118735.1 phosphatidylglycerophosphatase A -
  G5C59_RS05035 (G5C59_05005) thiL 1039294..1040262 (-) 969 WP_021113430.1 thiamine-phosphate kinase -
  G5C59_RS05040 (G5C59_05010) nusB 1040271..1040684 (-) 414 WP_021112072.1 transcription antitermination factor NusB -
  G5C59_RS05045 (G5C59_05015) comE 1040763..1042025 (-) 1263 WP_021113424.1 type IV pilus secretin PilQ Machinery gene
  G5C59_RS05050 (G5C59_05020) comD 1042035..1042421 (-) 387 WP_021112070.1 hypothetical protein Machinery gene
  G5C59_RS05055 (G5C59_05025) comC 1042421..1042951 (-) 531 WP_021113425.1 hypothetical protein Machinery gene
  G5C59_RS05060 (G5C59_05030) comB 1042948..1043469 (-) 522 WP_021113427.1 hypothetical protein Machinery gene
  G5C59_RS05065 (G5C59_05035) comA 1043445..1044122 (-) 678 WP_021113429.1 hypothetical protein Machinery gene
  G5C59_RS05070 (G5C59_05040) - 1044276..1046831 (+) 2556 WP_021119495.1 penicillin-binding protein 1A -
  G5C59_RS05075 (G5C59_05045) aroK 1047061..1047582 (+) 522 WP_015940157.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20366.05 Da        Isoelectric Point: 7.3560

>NTDB_id=424624 G5C59_RS05060 WP_021113427.1 1042948..1043469(-) (comB) [Glaesserella parasuis strain sHPS7]
MEWQGINLNGYRQQQWLKQSQKNLKHLTACLVVSTLLALLISWQNQQQQHQFHTLAQQRQQSQEQQTALSQQIEQLTLQS
QNKSRQSLENRQITAFLNYLLGIQLSGIIEIAQLYQAENTVFKLKGKVSSPTQFSELEQQLKAMNYIYQIEQFETREKSE
IEFSLHIDLKEKE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=424624 G5C59_RS05060 WP_021113427.1 1042948..1043469(-) (comB) [Glaesserella parasuis strain sHPS7]
ATGGAATGGCAAGGCATCAATCTAAATGGCTACCGCCAACAGCAATGGTTGAAACAGTCGCAAAAAAACCTCAAGCATCT
CACCGCTTGTCTTGTGGTTAGCACACTACTGGCGTTACTTATCAGTTGGCAAAATCAACAGCAACAACATCAATTTCACA
CTTTGGCTCAACAGCGACAACAAAGCCAAGAGCAACAAACCGCATTAAGCCAGCAGATTGAACAACTGACTTTGCAATCA
CAAAATAAAAGCAGACAAAGCCTAGAAAATAGGCAGATTACCGCATTTTTGAATTATCTGTTAGGCATTCAATTATCAGG
AATTATTGAGATAGCCCAACTATACCAAGCAGAAAATACCGTCTTTAAACTCAAAGGCAAAGTGTCTAGCCCTACTCAAT
TTAGCGAGCTTGAACAACAATTAAAAGCAATGAATTACATTTATCAAATAGAACAATTTGAAACGCGTGAAAAAAGCGAG
ATTGAATTTAGCCTACATATTGATTTAAAGGAAAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836MB14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Glaesserella parasuis strain SC1401

98.844

100

0.988